Caballeronia sp. SBC2: SBC2_32910
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Entry
SBC2_32910 CDS
T06459
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SBC2_32910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caba03021
]
SBC2_32910 (rpoC)
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_32910 (rpoC)
Enzymes [BR:
caba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SBC2_32910 (rpoC)
Transcription machinery [BR:
caba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SBC2_32910 (rpoC)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SBC2_32910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QIE25230
LinkDB
All DBs
Position
complement(3611238..3615485)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEVLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYASREAVNGKGEGMTFTGVSEAIRAYENK
EVELASRVNVRITENIHNPDQSEGAPKFVPKITLYATTIGRSILSEILPPGLPFSVLNRP
LKKKEISRLINTAFRKCGLRETVIFADQLMQMGFRLATRAGISICVDDMLVPPQKEQIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLATEPVVDRDGNQTK
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPESQETLYESGTLLDEDMVDEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAIIADDLGRERERHKIPYGATLLQLDGAQIKAG
AQLAQWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDAQGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDVEGEQHEFLITKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIMGEQVERSDMLDENDRMAAEDKIPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSREL
SDRQRFDQIAAEESFDFGTPEAAPVAPAEQQHPAE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaacctgaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtccttcggcgaagtgaagaag
cctgaaaccatcaactaccggacgttcaagccggaacgcgatggcctgttctgcgccaag
atttttggcccgatcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtgacgctcgccaaggtgcgtcgcgaa
cggatgggccacattgaactggcctcgccggttgcgcacatctggtttttgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtat
ttcgaagcatatgtagtgatcgaaccgggcatgacgccgctgaaagcgcggcagatcatg
acggaagaggattactacaataaggtcgaagaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgtgaactgctgcgcgcaatcaacatcgacgaacaggtcgaagtg
ctgcgtaccgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaagtgctcgaggcattccagcgttcgggcatcaagccggactggatggtgctggaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggacctgaacgacttgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagttgaaggcgcctgaaatcatcgtccgtaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgataacggtcgtcgcggtaaggcaatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgtttccgtcag
aacttgctcggtaagcgcgttgactattcgggtcgttcggtgatcgtggtgggtccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagcctttc
atcttcaacaagctggaagtgatgggtgttgctaccaccatcaaggccgcgaagaaggaa
gtcgagaaccagacagccgtggtgtgggacattttggaagaagtgatccgcgaacatccg
gtgatgctgaaccgcgcccctacgcttcaccgtcttggcatccaggctttcgagccggtg
ctgatcgaaggtaaggctattcagctgcatccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtcctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatattgtgctgggtctctactacgcatcgcgtgaagcggtgaatggc
aagggcgaaggcatgacgttcacgggcgtgtcggaagcgattcgcgcgtacgaaaacaag
gaagtcgagctggcgtcgcgggtgaatgtccggattacggaaaacattcacaacccggat
caaagcgaaggcgcaccgaagttcgtgccgaagatcacgctgtacgcaacgaccattggc
cgttctattctttcggaaattctgccgccaggactgccgttctcggtgctgaaccgtccg
ctgaagaagaaggaaatttcgcgcctgatcaacacggcattccgcaagtgcggtctgcgc
gaaacggtgatcttcgccgaccagctgatgcagatgggtttccgtctggctacgcgcgct
ggtatttcgatttgcgtcgacgacatgctcgtgccgccgcaaaaagaacagatcgtcggc
gacgctgccaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacctcg
caagagcgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggagcagttggctacggaacccgtggtcgaccgcgacggtaatcagacgaag
caggaatcgttcaactcgatctacatgatggccgactcgggcgctcgtggatccgctgtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggatggctcgattatc
gagacgcctatcacggcgaacttccgtgaaggcttgaacgtgttgcagtacttcatctcg
acgcacggtgcacgtaaaggcctggccgatacggcgttgaagacggcgaactcgggttac
ctgacgcgtcgtcttgttgacgtgacgcaggacttggtcgtggtcgaagacgattgcggc
acgacgaacggcgttgcaatgaaggcgttggttgaaggcggtgaagttgtcgaagccttg
cgtgaccggattctcggccgcgtgacggtggctgatgtcgtcaatccggaatcgcaggaa
acactgtacgaatcgggcacgttgctcgacgaagacatggtcgatgaaatcgaacgcctg
ggtattgacgaagtgcgcgtgcgcacgccgttgacctgcgaaacgcgttacggcctgtgc
gcttcgtgctacggccgcgacctgggtcgtggctcgcgcgtgaacgtcggcgaagcggtt
ggtgttatcgcggctcagtcgatcggcgaaccgggtacgcagctgaccatgcgtacgttc
cacatcggtggcgcggcgtcgcgtgcggctatcgcttcgtcggttgaagcgaagtcgaac
ggcacggtgcgtttcacggcaacgatgcgttacgtcacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgatcattgccgacgacctcggtcgtgagcgcgaacgt
cacaaaatcccgtacggcgcaacgttgctgcaactggacggcgcgcagatcaaggccggt
gcacaactggcgcaatgggatccgttgacgcgtccgatcatcaccgagtggggcggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggttgcgaagcagatcgacgatgtgacg
gggctttcaacgctcgtcgtgatcgacgtgaagcgtcgcggttcgcaagcggcgaagagc
gttcgtccgcaagtgaagctgctcgatgcgcagggcgaagaagtcaagatcccgaacacc
gagcattcggtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggacggtcag
caagtgcaggtcggtgaagtgctggcacgtatcccggttgaagcgcagaaaacgcgtgac
attaccggtggtctgccgcgtgtggccgaactgttcgaagcgcgctcgccgaaggacgcc
ggtattttggcggaagtcacgggtacgacgtcgtttggtaaggacacgaagggcaagcag
cgtctcgttattaccgacgtggaaggggaacagcatgagttcctgatcacgaaggaaaag
caggtgctggtgcacgatggtcaggtcgtcaacaagggcgaaatgattgtcgatggcccg
gctgacccgcacgacattctgcgtttgcagggtatcgaagcgctggctcgctacatcgtg
gacgaagtgcaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacattgaa
gtgatcgtgcgtcagatgttgcgtcgcgtgcagatcgtcgacaacggcgatacgcgtttc
atcatgggcgaacaggttgagcgttcggacatgctggacgagaacgaccggatggccgcg
gaagacaagatccccgcgacctacgagaacgtgctgctgggtattacgaaggcatcgctc
tcgaccgattcgttcatctcggcagcttcgttccaggaaacgacgcgcgtgttgaccgaa
gcggccatcatgggcaagcgcgacgatttgcgcggtctgaaggaaaacgtgatcgtcggc
cggttgattccggctggtacaggtctcgcgtttcacaaggcacgcaagagccgcgagttg
tcggatcgtcaacgcttcgaccagattgcagcggaagaatcgttcgatttcggcacgccc
gaagccgcacctgttgcacctgcagaacagcaacatccggcggagtaa
DBGET
integrated database retrieval system
