Caballeronia sp. SBC2: SBC2_42460
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Entry
SBC2_42460 CDS
T06459
Symbol
rpoD_1
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
caba
Caballeronia sp. SBC2
Pathway
caba02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SBC2_42460 (rpoD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caba03021
]
SBC2_42460 (rpoD_1)
Transcription machinery [BR:
caba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SBC2_42460 (rpoD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
TR61B_FKBP-like
YhjD
Motif
Other DBs
NCBI-ProteinID:
QIE26176
LinkDB
All DBs
Position
pSBC2-1:687938..689929
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AA seq
663 aa
AA seq
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MTSFDPTESNAGNGAPAKKSKARRGSADKLSRPMDESVCSPEQADERQRQMRALIQLGKQ
QGFLTHAEINDHLPGNFAQTSAIETIVSTFRDMGVAVYEEAPDSETLLLNDSAPTAVSDE
QSDEEAEVTLATVDSEFGRTTDPVRMYMREMGSTELLTRAGEIEIAKRIEDGLGEMIKAA
FTCPSTVITLLTTVDKIVAGELRIDELVDGFKDTTLDEDAVAADADTDAELDEAELASES
DDEDGETEDEQATRANATRLKHLLRDCLPIFANVRDHFDVFHAAYIADDSRTGDWPSVQE
HIQRELATIRFTARTIDRLCAEVHEQVEQVRAIERRILKIAVDLAGMPREKFVEVFPGHE
TDLEWTTRHAAASNAYGKALERSLPAIQAEQQKLIQIESNLMLPLLQLKALNKQMTSAEH
KMRQAKREMTEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTY
ATWWVRQAVTRSLADQGRTIRVPVHMIETINKLNRVSREILQQTGQEAHPSVLAVRLDLS
EEKVRSILKIARQPVSLETPLGEDGDTTLGDMVEDSNTESPADAAMHADMRLAIKDALDS
LSPREAKVLRMRFGIDTVSDHTLEEVGKQFDVTRERIRQIESKAMRKLVHPSRSEKLRSF
LAH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttttgatccaaccgaatctaacgccggcaacggcgctcctgcaaaaaaatcg
aaagcccgccgtgggtctgcggacaagctgtcgcgtccaatggacgaaagcgtttgctcg
cccgagcaggcggatgaacgtcaacgccagatgcgcgcgttgattcaactgggaaaacag
caaggtttcctgacccacgcagagatcaacgatcacctgccgggtaactttgctcagacg
tcggctatcgaaaccattgtcagcacgttccgcgacatgggcgtggccgtctatgaagaa
gcgcctgactcggaaacactgctgctgaacgattccgcccccacggcggtgtcggacgag
caatcggacgaagaagcggaagtcacgctggcgaccgttgactcggaattcggccggacg
accgatcccgtgcgtatgtatatgcgcgaaatgggcagcaccgaactgctgacccgtgcg
ggcgagatcgaaatcgcgaagcgcattgaagatggcctcggcgagatgatcaaggcggca
ttcacgtgtccgtcgaccgtgatcacgctgctcacgaccgtggacaagattgtcgcgggt
gaactgcgcatcgacgaactggtcgacggcttcaaggacaccacgctggacgaagacgcg
gtggcggccgatgccgacaccgacgctgaactcgacgaagctgaactcgcgtcggaaagc
gacgacgaagacggcgagaccgaagacgagcaggcaacgcgtgcgaacgcaactcgcctc
aagcatttgctgcgcgactgcttgcctatttttgcgaacgtgcgggaccatttcgacgtg
ttccacgcggcttatattgccgacgattcgcgcacaggcgactggccaagcgtgcaggaa
catatccagcgcgagctggcgaccattcgctttaccgctcgtaccatcgaccggttgtgc
gctgaagtccacgagcaggtcgaacaggttcgcgctattgaacgccgtattctgaagatc
gccgtcgatctggcgggcatgccgcgtgagaagttcgtggaagtattcccgggccacgag
acggatctcgagtggacgacccgtcacgcggcagcgtcgaacgcctatggcaaggcgctt
gaacgcagcctcccggccattcaggcggaacagcagaagctgatccagatcgagtcgaac
ctgatgttgccgctgttacaactgaaggcgctgaataagcagatgacgtccgccgagcac
aagatgcgtcaggcgaagcgcgaaatgacggaagcgaatctgcgtctggtgatttcgatt
gcgaagaagtatgtgaaccgcggtatgcatttcctggatctgatccaggaaggcaatatc
ggcttgatgaaggctgtggacaagttcgaataccggcgtggctggaagttctcgacgtac
gctacgtggtgggtccgtcaggctgtgacacgttcgctcgccgatcagggccggaccatt
cgcgtgccggttcacatgatcgagacgatcaacaagctgaaccgtgtatcgcgcgaaatc
ctgcagcagacgggtcaggaagcgcatccgtcggtgttggcggtgcgcctcgatttgtcg
gaagaaaaggttcgcagcattctgaagattgcacggcagccggtttcgctcgaaacgcct
ttgggcgaagacggcgacaccacgctgggcgacatggtggaggattcgaacacggaatcc
ccggccgatgccgccatgcacgccgacatgcgtctggcgatcaaggatgcgctggattca
ttgtcgccgcgtgaagcgaaggtgctgcgcatgcgctttggtattgacaccgtatccgac
catacgctggaagaagtcggcaaacagttcgatgtgacgcgtgagcgcattcgccagatt
gaaagcaaggcgatgcgcaagctggtgcatccgagccggtcggaaaagttgcggtcgttc
ctggcacattaa
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