Caballeronia sp. SBC2: SBC2_52580
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Entry
SBC2_52580 CDS
T06459
Symbol
vnfA_2
Name
(GenBank) Nitrogen fixation protein VnfA
KO
K02584
Nif-specific regulatory protein
Organism
caba
Caballeronia sp. SBC2
Pathway
caba02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SBC2_52580 (vnfA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caba03000
]
SBC2_52580 (vnfA_2)
Transcription factors [BR:
caba03000
]
Prokaryotic type
Helix-turn-helix
Other families
SBC2_52580 (vnfA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
HTH_8
AAA_5
GAF_3
Mg_chelatase
AAA
AAA_2
AAA_16
AAA_22
Nnf1
UBA
Motif
Other DBs
NCBI-ProteinID:
QIE27188
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Position
pSBC2-1:complement(1763428..1765293)
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AA seq
621 aa
AA seq
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MTTRISLIRLGISSFSSYLCWGNDDRDFDFFIAQFLSDLPTNLTMPGKPLVTDVPALVCH
LRDSAIIRVMTTHCDECPKMRTDQDFGDAESPAYWREHEMLLLQQVMALVGKNLSPLAAL
REMLHLMSELLGLNRGRIVLSDENRQFCRIRHAYGLTRKEIERGCYAFGEGITGRVIQNG
QLAIVQDIDQEPSFLARAVERSKLPPGPVAFIALPISIDRVTVGVLACHRIRRRSRALAD
DLTLLRILATLVGQLLQLEARLQEKTQALEQQNAALARALESATARYGIIGTSPRLLSAI
SELERVSDSAASVLLLGESGTGKELFARALHLASPRRDKAFIKINCAAIPDALFESELFG
YERGAFTGAATMRAGWFEQADAGTIFLDEIGELPLTMQTKLLRTLQEGTMTRLGGKREIR
IDVRLVAATNRDLQVEVARGGFRQDLYYRLNVIPIHLPSLAERREDIRALALHFISHANQ
VNQRNVNLTASALDRLRQHSWPGNIRELANVIERIVLLADRPILNAADVERFLPDERAAA
LASQPVDVPDVQDHASILAANMRRASLLPTRPYERVGSHSADALREALRQCGGNKSRAAQ
MLGMTVRQFNYRWQKLGLADA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacgaggatctcgctcatcaggctcggtatctccagtttttcgagttacctctgc
tggggaaacgatgaccgcgatttcgatttcttcatcgcgcaatttttaagtgatctgccc
accaacctgacaatgccggggaaaccactcgttactgatgtacccgcgcttgtttgtcat
cttcgcgattctgcaataattcgcgttatgacgacccattgcgacgagtgtccgaagatg
cgaaccgatcaggacttcggagatgctgagtctcccgcctactggcgcgagcacgaaatg
ctcctgctgcaacaagtgatggcgctggtgggcaagaacctgtctccgcttgccgcgctg
cgtgaaatgctgcacctgatgtcggaattgctcggcctgaaccggggacggatcgtgcta
agcgacgaaaaccggcaattctgtcgaattcggcacgcgtacggattgaccagaaaagaa
atagagcgtggatgctatgcgtttggtgaaggcattaccggtcgcgtgatccagaatggc
cagttggcgatcgttcaggatatcgaccaggaaccatcgttcttggcccgcgcagtggaa
cgctcgaaacttccccccggacccgtggcgttcatcgccctccctatctcgatcgaccgg
gtgactgtcggcgttcttgcttgtcaccgcatacgaagacgctcgcgcgcgcttgccgac
gacctgacgctcctgcgcattctcgccacgctcgtcgggcaactgctgcaactcgaagca
cgtttgcaggaaaagacccaggcgctcgaacagcagaatgcggctttggcgcgcgcgctg
gaatcggcaaccgctcgctacggaatcatagggacttcgcccaggttgttgagcgctatc
tccgagctcgaacgggtatcggattcggccgcgagcgtgctgttgctcggagagtcggga
accggcaaggagcttttcgcgcgcgccctgcatcttgcaagcccgcgacgtgacaaggca
ttcatcaagatcaactgcgcggccataccggatgcgctgttcgaatcggaactgttcggc
tatgaacgcggcgcattcaccggtgcggccaccatgcgcgccggatggttcgagcaagcg
gatgcgggaaccatctttctcgatgaaatcggcgagttgccgctgacgatgcaaaccaag
ctgctgcgcaccctgcaggagggcacgatgacgcgactcggcggcaagcgggaaattcgc
atcgatgtccgcctggttgcagccaccaaccgcgatctccaggtcgaggtcgcgagggga
gggttcaggcaggacctctactatcggctcaatgtcattccgattcatctgccttcgcta
gcggagcgccgcgaggacatacgtgcactggcgctgcatttcatcagtcatgccaaccag
gtcaatcaacgcaacgtcaacctgactgcaagcgcccttgaccgcctccggcaacattcg
tggcccggcaatatccgtgaactggcgaacgtgatcgagcgaatcgtgttgctggcagac
cggccgattctgaacgcggcggacgttgaacgtttcctgcccgatgaaagggcggcggcg
ctggcgtcgcaaccggtcgacgtgccggacgtccaggatcacgcgagcattctggccgca
aacatgcggcgggcgagcctgctgcccacgcgtccctatgagcgtgtggggtcgcactcc
gccgacgcgctgcgcgaggcgcttcgacagtgcggcgggaacaagtcgcgcgctgcgcag
atgcttgggatgacggtgcggcagttcaactaccggtggcaaaagctgggcttggcggac
gcctga
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