Caballeronia sp. SBC2: SBC2_56570
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Entry
SBC2_56570 CDS
T06459
Name
(GenBank) Eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
caba
Caballeronia sp. SBC2
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caba03032
]
SBC2_56570
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_56570
Enzymes [BR:
caba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SBC2_56570
DNA replication proteins [BR:
caba03032
]
Prokaryotic type
DNA Topoisomerases
SBC2_56570
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SBC2_56570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
FliG_C
Motif
Other DBs
NCBI-ProteinID:
QIE27583
LinkDB
All DBs
Position
pSBC2-2:229621..230925
Genome browser
AA seq
434 aa
AA seq
DB search
MTSPLEQQPQSEIKGCPEDLPPGLRYVDDSRPGYTREWKNGTFVYFNTQGNPLSDDADIK
RINALAIPPAYTNVWICPDSRGHLQATGRDARGRKQYRYHPHWRETRDATKYERMLAFSA
VLPKLRARVTRDLELEGMPRDKVLATVVRLLDTTLIRVGSEEYARENKSYGLTTLRKKHL
SVKSGTLRFQFRGKSGIEHDVSVNDARIAGIIKRCMDLPGHDLFQYLDTNGERHTVSSSD
INDYLHDITGADFTAKDYRTWAGSVFALAALRKLAWETVTEARKHVVGTIKEVSKILRNT
PAVCRKCYVHPAVIAAFEAGELADELPPSRRSGLKTDEAMLAIFLEKDAKRRAREAARGR
KIQANGADPRLTRLLAKSSQKAKAAALKNSSKDVRMEALAAVSKTAAPKAASTAARPATK
KIARVRSSTAVAIG
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcccccctggagcaacaaccgcagagcgagatcaagggctgcccggaagacctg
cccccgggtttgcgctacgtcgatgattcccgccccggctacacgcgcgagtggaaaaac
ggcaccttcgtctatttcaacacccagggcaacccgctctccgacgacgccgacatcaaa
cgcatcaacgcgctcgctatcccacccgcttacacgaacgtctggatctgccccgactca
cgcggccacttgcaagccaccggccgcgatgcgcgggggcgcaaacaatatcgatatcac
ccgcattggcgcgaaacccgcgacgccaccaagtacgaacgaatgctggcattcagcgct
gtattaccgaaacttcgcgcacgcgtaacccgggatctcgaactcgaaggcatgccccgc
gacaaagtcctggccacagtagtcaggctcctcgacaccacgctgattcgcgtaggcagc
gaagaatacgcacgcgaaaataagtcgtacggactcaccaccctgcgcaagaaacacttg
agcgtcaaatccggcacgctacgctttcagttccgcggcaaaagcggcatcgagcacgat
gtctcggtgaacgacgcgcgcattgccgggatcataaaacgctgcatggacctgcccggt
catgacctgttccagtacctcgacacgaacggcgaacgccacaccgtcagctcctccgat
atcaacgactacctccacgacatcaccggcgccgacttcacggcaaaggactaccggaca
tgggccggcagcgtgttcgccctggcggcgctgcgcaagctggcgtgggaaaccgtgacc
gaagcacgcaagcatgtggtcggcacgatcaaggaagtatccaagatattgcgcaataca
ccggcagtgtgccgaaaatgctatgtccatccagcggtgatcgcagcgttcgaagccggc
gagctcgccgacgaattgccaccctcccgccgatccggcctgaaaaccgacgaagcaatg
ctcgccatttttctggaaaaggacgcaaagcgccgcgctcgtgaagcagcacgaggccgc
aagatccaggcgaatggcgcggatcctcggctcacccggttgctcgccaagtccagtcaa
aaagcgaaagcggcggcactcaagaactcatcgaaagacgtcaggatggaggcgctggcg
gcggtgtcgaaaaccgctgcaccgaaagccgcatcgacggccgcacgccctgcaaccaaa
aagatcgcgcgtgtacggtcgtcgacggctgtcgctatcggctag
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