Caballeronia sp. SBC2: SBC2_56810
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Entry
SBC2_56810 CDS
T06459
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03030
DNA replication
caba03410
Base excision repair
caba03420
Nucleotide excision repair
caba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBC2_56810 (polA)
03410 Base excision repair
SBC2_56810 (polA)
03420 Nucleotide excision repair
SBC2_56810 (polA)
03440 Homologous recombination
SBC2_56810 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caba03032
]
SBC2_56810 (polA)
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_56810 (polA)
Enzymes [BR:
caba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SBC2_56810 (polA)
DNA replication proteins [BR:
caba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SBC2_56810 (polA)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SBC2_56810 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBC2_56810 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QIE27607
LinkDB
All DBs
Position
pSBC2-2:250051..252795
Genome browser
AA seq
914 aa
AA seq
DB search
MPEELNLEGKTLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRLRKDINAEY
SACVFDAKGKTFRDDWYPDYKANRPSMPDDLSKQIEPIHVIVRALGWPLVMIEGVEADDV
IGTLAVAAEKRGMKVVVSTGDKDLAQLVTDHVTLINTMSNETLDRAGVLGKFGVPPERIV
DYLSLIGDTVDNVPGVEKCGPKTALKWLAQYETLDGIVAHADEIKGAVGDNLRKALPFLP
LAKRLVTVQTECDLTEQIVSIEETLPARPEARDELRDLFTRHGFKTWLREVEIADAVEGP
EDTPTPPAPATEMERHYDTVQTWEQFDEWLARINAAELTSFDTETTALDPMLAQLVGLSV
SVEPGHAAYIPVAHRGPDAPLQLPRDEVLQKLKSWLEDPSKKKVGQHLKYDEQVLANYGI
ELNGVEHDTLLQSYVLESHRPHDMDNLALRHLGAKTIKYEEVAGKGASQIGFDEVALDQA
APYAAEDADITLRLHQALYPQLADEAQLLKVYRDIEMPTSRVLRKMERNGVLIDGELLRV
QSGQIATRLIQLEAEAYMLAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVL
QKLAEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTNYAQAVAVTGRLSSNEP
NLQNIPVRTGEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISGDPSLMRSFAEGEDVH
RATAAEIFSVTPIEVSSDQRRIAKVINFGLIYGMSAFGLASNIGISRDAAKLYIDRYFLR
YPGVANYMEETRTKAKRDGFVETVFGRRLWLPEINGGSGPRRQGAERAAINAPMQGTAAD
LIKLSMIAVQDWLEASKSQTKMIMQVHDELVLEVPEAELPEVRKRLPELMCGVAKLKVPL
VAEVGVGNNWEEAH
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaacttaatcttgaaggtaagaccctgctattggtcgacggatccagctat
ctctatcgggcctaccacgccatgccggatttgcgcgggcctgacggcggtccaaccggc
gcgctgtatggaatgatcaacatgctgcggcggttgcgaaaggacatcaatgcagagtat
agcgcgtgcgtattcgacgccaagggcaagacatttcgcgacgactggtacccggattac
aaggcaaaccggccgtccatgcctgatgacctctcgaaacagatagagcccatccacgtg
atcgtgcgagcgctcggctggccgctggtgatgatcgagggcgtggaggccgacgacgtc
attggcacgcttgcggttgccgccgaaaagcgcggcatgaaagtggtcgtgtcgaccggg
gacaaggatctggcgcagcttgtgacggatcatgtcaccctcatcaatacgatgtccaac
gagacgctcgatcgcgccggggtgctgggtaagttcggcgtgccgcctgagcggatcgtc
gactatctctcgctcatcggcgatacggtcgataacgtaccgggtgtcgaaaagtgcggg
ccgaagacggcgttgaaatggcttgcacaatacgaaacccttgatggcatcgtggcacac
gcggacgaaataaaaggtgcggtgggagacaatctgcgcaaggctttgccgttcctcccc
ctggcgaaaaggctggttaccgtacagacggaatgcgacctgacggagcagatcgtgtcg
atcgaggaaacgcttccggcgcggcccgaggcccgcgacgaactgcgcgacctgttcaca
cgccacggtttcaagacctggctgcgggaagtggaaattgcggatgcggtggaaggtccc
gaggacacgccaacgccacccgcgccggccaccgaaatggagcggcattacgacaccgtg
cagacatgggagcaattcgacgaatggctcgcgcgcatcaacgccgccgagctgacttcc
ttcgataccgaaacgaccgcgctcgaccccatgctcgcgcaactcgtcgggttgtctgtg
tcggttgagccggggcatgcggcttatattccggtcgcgcatcgcgggccggacgcgccg
ctgcaactgccgcgcgatgaagtcctgcaaaagcttaaatcgtggctggaagatccgtcg
aagaagaaggtcggtcagcatctgaaatacgatgagcaagtgctggcgaactacggcatt
gaattgaacggcgtcgagcatgacacgctgttgcaatcgtatgtgctggagtcgcaccgg
ccccacgacatggacaatctcgcgctgcggcatctgggcgcgaagaccatcaagtatgaa
gaggtggcgggcaagggcgcttcgcagatcggcttcgacgaagtggcgctggaccaggcc
gcgccctacgcagcggaagacgcggacatcacattgcggctgcatcaagcgctttatccg
caactcgccgatgaagcgcaattgctgaaggtgtatcgcgacattgaaatgccgacgtca
cgcgtgttgcgcaagatggagcgtaatggcgtgctgatcgacggcgaattgctgcgcgtg
caaagcggccagatcgccacgcgtctgattcagttggaagccgaggcgtacatgctcgcg
ggcggcgaattcaatctgggttcgccgaaacagatcggccagattttcttcgagaagctg
caattgccggtggtcaagaaaaccccgagcggcgcgccttccaccgacgaagaagtgctg
cagaagctcgccgaagattatccgttgccgaagatcctgttggagcatcgtggcttgtcg
aagctgaagtctacttacacggacaagctgccgcgcatggtcaacgccaagaccggccgt
gtgcatacgaactatgcgcaggcggtggcagtgacggggcggctctcgtcgaatgagccg
aacctgcagaatattccggtgcgtacgggcgaaggccggcggattcgtgaggcgttcatt
gcgccgccgggcagcaagattgtgtcggcggattactcgcagatcgagttgcggatcatg
gcgcatatctccggcgatccgtcgctgatgcgctcgttcgccgaaggcgaggacgtgcat
cgggcgaccgcggcggagattttcagcgtcacgcctattgaggtgtcgagcgatcagcgg
cgcattgcgaaggtcatcaacttcggcttgatctacggcatgagcgcgttcgggctggca
tcgaatatcggcatttcgcgcgatgcggcgaagctttatatcgaccgctatttcctgcgc
tatccgggtgtcgccaactacatggaagaaacgcgtacgaaggcgaagcgcgatggtttt
gtcgagaccgtgttcggacggcgcttgtggctgcccgagatcaacggtggcagcggaccg
cgccggcaaggtgccgagcgtgcagcgatcaacgcgcccatgcaaggcacggcggcggac
ctcatcaagctttcaatgatcgccgtgcaggattggctggaagcatcgaagagtcagacc
aagatgatcatgcaggtccacgacgaactcgtgctcgaagtgcccgaagccgagttgcct
gaagtccgcaagcgcctgccggagttgatgtgcggcgttgccaaactgaaggtgccgctg
gtggcggaagtcggggtgggcaataactgggaagaagcccactga
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