Caballeronia sp. SBC2: SBC2_80800
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Entry
SBC2_80800 CDS
T06459
Symbol
speF
Name
(GenBank) Inducible ornithine decarboxylase
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba00330
Arginine and proline metabolism
caba00480
Glutathione metabolism
caba01100
Metabolic pathways
caba01110
Biosynthesis of secondary metabolites
caba04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
SBC2_80800 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
SBC2_80800 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
SBC2_80800 (speF)
Enzymes [BR:
caba01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
SBC2_80800 (speF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
QIE30004
LinkDB
All DBs
Position
pSBC2-4:194515..196851
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AA seq
778 aa
AA seq
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MLYDQMFGFLFCCALPLPPALPSSRFQRLVDELERLRYATKVTVTVAEASSAIRSEAAVG
CVIVEWSLTESETDVEAFVRFVRERGLDVPIFILVERHLLAEIPVAVLGHVTGYVFIEED
TPEFVARNLVSHLRTYADSLKTPFFGAMVDYAEQANQMWTCPGHNGGVFYQKSPIGRAFI
KHLGEAVFRNDLDNSVVELGDLLVHEGPALAAQKAAARIFGAERTYFVLNGTSTSNKIAL
TALVTPGDLVLFDRNNHKAAHHGALLLGGGIPVYLQTQRNAHGMIGPIDFDALDEDRIRD
GIRYNKLVTDPKAWQRERPFRVAVIEQCTYDGTIYDAQMLIEKIGHLCEYILFDEAWAGF
MKFHPLFKGRFAMGIEGLDANAPGILATQSTHKQLAGFSQASQIHVKDAHLDGQRRQVSH
RRFNETFMQHSSTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIKLGIEMRKKIRALKHDY
EATETDPARRWFFDPFVPDEVTATGGMRRWEDLSTDELASNPRYWELAPDAKWHGFGHLA
PGYAMTDPNKLTLITPGFDRTTGEYAQRGIPAAVLAEFLRERRIVPEKNDLNSILFLLTP
GLESSKAGTLLSALVRFKQLHDENALLDDVIPTFVAAHHERYAGIGLRELCADMHAFYRE
RNASRLQREQFRAAHFPEMAMTPQAAMHELVRNNVELLPIDKIEGRIAATLGLVYPPGIA
VVVSGERYTERAMPTLDYFRMFEEGGNRFPGFENEIQGIYRKKETDGSVRLYTYVVSG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgctatatgaccagatgttcggcttcctgttttgctgcgcgttgcccttgccaccggcg
ttgccatcgtcacgctttcagcgcctcgtcgatgaactcgaacgcctgcggtacgcgacc
aaggtcacggtcacggtggcggaagcatcctccgcgatccgcagcgaggctgcagttggc
tgtgtgatcgtggaatggtcgctgaccgagtcagagacggacgttgaggctttcgtgcgc
tttgtccgggagcggggtctggacgtacccatcttcatcctggtcgagcgccatctgctc
gcggaaattccggttgcagtgctggggcatgtgacgggttatgtgttcatcgaagaggat
acgcctgagttcgtcgcccgcaatctagtgagccatctgcggacgtacgcggactcgctc
aagacgccgttcttcggtgcgatggtcgactatgcggagcaggcaaaccagatgtggacc
tgtccgggccacaacggcggcgtgttttaccagaagagtccgatcggccgcgcgttcatc
aagcatctgggcgaagcggtattccgtaatgacctggataactccgttgtcgaactgggt
gacctgctggttcatgaaggccccgcgctcgctgcgcagaaagcggcagcgcggatcttc
ggcgctgagcgaacctacttcgtgctgaacggtacgtccacgtccaataagattgcattg
accgcactcgtgacaccgggtgacctggtgctcttcgatcgcaacaaccataaggctgca
catcatggcgcgctgctgctcggcgggggcatccccgtctatttgcagacgcaacgcaac
gcgcacgggatgatcggcccgatcgatttcgacgcgctcgacgaagaccgcatccgcgac
ggcattcgttacaacaagctcgtcaccgatcccaaggcgtggcagcgtgagcggccgttt
cgtgttgcggtgatcgagcaatgcacctacgacggcacgatctacgacgcgcaaatgctg
atcgagaagatcgggcatctgtgcgaatacattctcttcgacgaagcctgggccggcttc
atgaagttccatccgttgttcaagggacgtttcgcgatgggcatcgagggactggatgcc
aacgcgcccggcatccttgccacgcagtcgacacacaagcaactcgctggtttctcgcag
gcgtcgcagatccacgtgaaagacgcgcaccttgacggccagcgtcggcaggtaagtcac
cggcgcttcaacgagaccttcatgcagcactcgtccacgtcgccgttctatccgttgttc
gcctcgctcgatgtgggcgcgcaaatgatgaagggccgctctggcgaggtgctgtgggac
gacacgatcaagctcgggatcgagatgcgcaagaagatccgcgcgctgaaacacgactac
gaagcgacggagacggaccccgctcggcgctggttcttcgatccgttcgtgcctgacgag
gtcacagccacgggcggcatgcgacgctgggaagacctgtcgacagatgaactcgcgagc
aacccacgttactgggagctcgcgccggatgcgaaatggcatggcttcggccaccttgct
ccgggctatgcgatgacagacccgaacaagctgacgctcatcacgcccgggtttgatcga
accacgggcgaatacgcgcagcgcggcattccggcggcggtgctcgccgagttcctgcgc
gaacggcgcatcgtgcctgagaagaacgacctcaacagcatcctgttcctgctgacgcct
gggctggagtcgagcaaagcgggcacgctgctttcggcattggtgcgtttcaagcaattg
cacgacgagaacgcgcttctcgacgatgtcattcccaccttcgtcgccgcgcatcacgag
cgttacgcaggaatcggcttgcgtgaactttgcgccgacatgcatgcgttctatcgcgag
cgcaatgcgagccgcctgcagcgcgagcagtttcgcgcagcgcactttcccgagatggcg
atgacgccgcaagccgccatgcatgaactggtacgcaacaacgtggagctgttgccgatc
gacaagatcgagggacgaatcgcggcaacactcggtcttgtctatccgccgggtatcgcg
gtggtggtatccggcgagcgttacaccgagcgcgcgatgccgacgctcgattacttccgg
atgttcgaggaaggcggcaaccgtttccctggtttcgagaacgagatccagggcatctat
cgaaagaaggagaccgacggcagcgtgcggctctatacctacgtcgttagtggttga
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