Chelonoidis abingdonii (Abingdon island giant tortoise): 116815217
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Entry
116815217 CDS
T07367
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116815217 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cabi03041
]
116815217 (SNRNP200)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116815217 (SNRNP200)
Spliceosome [BR:
cabi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116815217 (SNRNP200)
Complex C
U5 SnRNP specific factors
116815217 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Terminase_6N
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
116815217
NCBI-ProteinID:
XP_032619253
Ensembl:
ENSCABG00000020216
UniProt:
A0A8C0J951
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKRDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTNLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVDKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPVKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPSLYGLSHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFLDWYEKFQERLGKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDLGPYLDKLSDGTLKETLLNGVGYL
HEGLTAMERRVVEQLFGSGAVQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNGLLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcgcggagcctgcagtacgagtacaaggcgaactctaacctcgta
cttcaagctgatcgctccttgatcgacaggacccgccgagatgagcctacaggggaggtg
ctctccttggttgggaagctggagggcactcgaatgggtgacaaggctcaaagaaccaaa
ccccagatgcaggaagagagacgagcgaagaggaggaagcgtgatgaggacaggcatgat
atcaacaaaatgaagggttatacgctactctctgaaggcattgatgagatggtgggaatc
atctacaaacccaaaacgaaggagacccgggagacctatgaggtgctgctaagtttcatt
caggcagcccttggggaccagccacgtgacattctctgtggagcagcggacgaggtcttg
gctgtattgaagaatgagaagctgcgtgacaaagagaggcggaaggaaattgatttgctg
ttaggacagacggacgacacccgctaccatgtgctggtgaacttgggcaagaagatcaca
gactatggtggtgacaaggagatccagaacatggatgataacattgatgagacgtatgga
gtgaatgtgcagtttgagtctgatgaagaggaaggcgatgaggacgtgtacggtgaagta
cgggatgaggcgtctgatgatgacatggagggggacgaggctgttgtccgctgcaccctc
tcagccaatctggtggcctcaggtgagctgatgagctccaagaagagagacttgcatccc
cgagacatcgatgccttttggcttcagcggcagctgagtcgcttctacgatgatgccatc
gtgtcccagaagaaagcagacgaggtgctagagatcttaaagactgccagcgatgacagg
gagtgtgaaaaccagcttgtcctgctcctgggctttaacacctttgacttcattaaggtg
ctgaggcagcacagaatgatgatcctgtactgtacgctgctggctagtgcacaaagtgaa
gccgagaaggagaggatcatggggaagatggaatctgatcccgagctgtcaaaatttctg
tatcagctgcatgagacggagaaggaggatctgattcgggaggaacgctctcgcagggaa
cgtgtgcgccagtcccggatggacacaaacctggaaaccatggatctggatcagggtgga
gaggcgctggccccgcgccaggttttggatctggaagatctggtgtttgctcagggcagc
catttcatggccaacaagcgttgccagctgcctgatggctcgttccgcaggcagcgcaag
ggctacgaggaggtgcatgtgcctgccttgaagccaaagccctttggctccgaagagcaa
ctggtttctgtggacaaactgcccaaatatgcccaggctgggttcgaggggttcaaaacc
ctgaaccggattcagagcaaactctaccgtgctgcgcttgagactgatgagaacctgcta
ctctgtgctcccacgggtgcagggaagaccaacgtcgctctgatgtgcatgctacgtgag
atcgggaagcacatcaacatggatggaaccattaacgtggatgacttcaaaatcatctac
attgcacccatgcggtctctagtgcaggagatggtgggcagctttgggaagcgcctggca
acttatggcatcaatgtggccgagctgactggagaccatcagttgtgtaaggaagaaatc
aacgctacacagatcatcgtctgcacccctgagaagtgggacatcatcacccgcaagggc
ggagagcgcacctatacccagctggtgcgcctcattatcctggatgagatccacttgctg
catgacgaccggggccctgtcctggagtccttggtggctagagccatccgcaacattgag
atgacccaggaggatgtgaggcttgttggcctgagtgccactctcccaaactacgaggat
gtagctacgttcctgagagtggaccccgtcaaaggcttattctactttgataacagcttt
cgcccagtgcctctggagcagacctatgtgggaatcacagagaagaaagcaatcaagcgc
ttccagatcatgaatgagattgtctacgagaagattatggagcatgctgggaagaaccag
gtgctggtgtttgttcactccaggaaggagacagggaagacggcccgagccatcagggac
atgtgtctggagaaagatacgctgggcctcttccttcgcgagggctcagcctccacagag
gttctgaggacagaagctgagcagtgcaagaacctagagctgaaggacctgttgccatac
ggctttgctattcaccatgctgggatgacccgagtagatcgaacactggtggaggatctg
tttgctgacaagcacattcaggttctggtctccacggcgacgctggcttggggtgtgaac
cttcctgctcacacggtcatcatcaaagggacgcaggtgtacagcccggagaaaggccgc
tggacggagctgggtgctctggacatcctgcagatgcttggccgtgctgggagaccccag
tacgacacaaaaggcgaggggatcctcatcacatcacacggagaactgcagtattacctc
tccctactcaaccagcagctccctattgagagtcagatggtgtcgaaactgccggatatg
ctgaatgcagaggttgtgctggggaacgtccagaatgcaaaggatgcagtgaactggctg
ggctacgcctacctgtacatccgaatgctgcgctccccgtcgctctatgggctctctcac
gatgacctgaagggagatcccttgctggaccagcgccggctggatttggttcacactgca
gccctgatgctagacaagaacaatcttgtgaagtacgataagaagacggggaacttccag
gtgactgagctgggccgcattgccagccactactacatcaccaacgagaccgtgcaaacc
tacaaccagctcctgaagcccaccttgagtgaaatcgagctcttccgggtcttctccctg
tcctccgagttcaagaacatcactgtccgggaggaagagaagctggagctccagaagctg
ctggagcgggtcccaattccagtgaaggagagcatcgaggagcccagtgccaagatcaat
gtgctcctgcaggcctttatctcccagctgaagctggaagggtttgctctgatggcagac
atggtgtacgtcacccagtctgctgggcggctgatgcgtgcgatctttgagattgtcctg
aaccgtggctgggcgcagctcactgacaagactctgaatctctgcaagatgattgacaag
cgcatgtggcagtccatgtgccccctgcgccagttcaggaaactgcctgaggaggtggtg
aagaaaatcgagaagaagaacttcccatttgaacgtctctatgacctgaatcacaatgaa
ataggggagctcattcggatgcccaagatgggcaagacgatccacaagtacgttcatctg
ttcccaaagctggagctgtcggtccatctccagcccatcaccaggtccaccctgaaagtg
gagctgaccatcacccctgacttccagtgggatgagaaggtgcacggctcgtcggaagcc
ttctggatcctggtggaggatgtggacagtgaagtgattctgcaccacgagtatttcctg
ctgaaagccaagtatgcccaggacgagcatctcatcaccttcttcgtgcctgtgttcgag
ccgctgcctccgcagtacttcatccgggtggtctcagaccgctggctgtcctgtgagacg
cagctgcctgtgtcctttaggcacctgattcttcccgagaaataccccccacccacagag
ctcctggacctgcagccgctgcctgtgtccgctctgcgtaacagtgcttttgagagtctc
taccaggacaagttccccttcttcaaccccatccagacccaagtgtttaacaccgtctat
aacagcgacgacaatgtgttcgtgggcgcccccacggggagtggcaagaccatctgtgcc
gagtttgccatcctgaggatgctgctgcagaactcagaggggcgctgtgtctatatcacc
cccatggaggcccttgctgagcaggtcttcctcgactggtacgagaagttccaggagcgg
ctcggtaagaaagtggtcctgctgacgggggagaccagcacggatctcaagctgctgggc
aagggtaacatcatcatcagtacccccgagaagtgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaatgtcaacctcttcatcgtggacgaagtgcacctcatcggg
ggcgagaatgggcctgtactggaggtgatctgttcccggatgcgctacatctcctcccag
atcgagcggcccatccgcatcgtggccctcagctcctcactgtccaacgctaaggatgtc
gctcactggctgggctgcagcgccacgtcgaccttcaactttcaccccaacgtgcgcccc
gtgcccctggagctgcacattcagggcttcaacatcagccacacgcagacccgcctgctg
tccatggccaagcctgtctatcatgccatcatgaagcactcccccaaaaagccagtcatc
gtctttgtcccgtcccgcaagcagacgcgcctcacggccatagacatcctcaccacctgt
gcctccgatgtgcagaggcagaggttcctgcactgcacagagaaggacttggggccatac
ttggacaagctgagcgacggcaccctcaaggagacgctgcttaacggcgttggctaccta
cacgaggggctgacagccatggaacggcgcgtggtggagcagctgttcggctctggtgct
gtccaggtggtggtggcctctcgaagcctgtgctggggcatgaacgttgctgctcacctg
gtgatcatcatggacactcagtactataatggcaagattcatgcgtatgtggattacccc
atctatgatgtgctgcagatggtgggccatgccaatcgccccctgcaggatgacgagggg
cgctgcgttattatgtgccagggatccaagaaggatttcttcaagaagttcctgtacgag
cccctcccggtggagtcgcacctggatcactgcatgcacgaccactttaatgctgagatt
gtcaccaagaccatcgagaacaagcaggacgctgtggactacctcacctggaccttcctg
taccgcaggatgacccagaaccccaactactacaacctgcaaggggtgtctcacagacac
ttgtccgaccacctgtccgagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcattgaggacgagatggacgtggcgcccctcaacctagggatgatcgcagca
tattactacattaactacaccacgatcgagctgttcagcatgtctctgaatgccaagacc
aaggtgcgagggctgattgaaatcatctccaacgctgctgagtacgagaacatccctatc
aggcaccacgaggataacctcctgcggcagctggcgcagaaagtccctcataaactgaat
aaccccaagttcaacgacccccacgtcaagaccaacctgctgctgcaggctcacctgtcc
cgcatgcagctgagcgctgagctgcagtccgacacggaggagatcctcagcaaggcgatt
cgcttgatccaggcctgcgtggacgttctgtccagcaacggctggctcagcccggccctg
gcggccatggagctggcccagatggttacccaggccatgtggtcaaaggactcatacctg
aagcagctgcctcacttcacttcggagcacatcaagcgctgcacggataagggggtagag
agtgtgtttgacatcatggagatggaggacgaggaccgcaacggcctgctgcagctctcc
gacgcccagatcgctgacgtggcccgtttctgcaaccgataccctaacatcgagctttcc
tacgaggtggtggagaaggagagtatccgcagcggagggccggtggtggtgctggtgcag
ctggagcgagaggaggaggttacgggacctgtcattgctcccctcttcccccagaaacgc
gaggagggctggtgggtagtgatcggcgactccaaatccaacagcctcatctccatcaag
aggctgactcttcagcagaaggccaaggtgaaactggattttgtggccccagccacaggc
gcccacaactacaccctctacttcatgagtgacgcctacatgggctgtgaccaggagtat
aaattcagcgtggatgtgaaggaggcagagagcgacagcgactcggactga
DBGET
integrated database retrieval system
