Chelonoidis abingdonii (Abingdon island giant tortoise): 116815357
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Entry
116815357 CDS
T07367
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116815357 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cabi04131
]
116815357 (VPS8)
Membrane trafficking [BR:
cabi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116815357 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_IFT122_1st
Beta-prop_NOL10_N
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf-RING_UBOX
EIF3I
Motif
Other DBs
NCBI-GeneID:
116815357
NCBI-ProteinID:
XP_032619514
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All DBs
Position
8:50889432..51119680
Genome browser
AA seq
1405 aa
AA seq
DB search
MEPESLGAEQGASLPGPAEELGALLGQDAALLPLSGGELDRELESKSDLIDDKEFDIPQV
DTPPTLESILNETDDEEESFVLEDPSLLNIDNIDTHSYDTSSLASSDSGDRTHLKRKKKL
PDFFSLHGSVVRLSLLKGISAQIVSAADKVDAGLPTAIAASSLIAVGTSHGLALIFDPNQ
ALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLANGKLLRSITDAHPPG
TAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAK
TELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAIQNS
VNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLRYDLINFTWINSRTVVLLDSVEKL
HVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSCGGQI
FYLGTKSVHVMMIRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAV
IADRMVEILFHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFSQIYDK
LSENSVAKGVFLECLEPYILSDKLMGMTAQVMKDLLLHYQDKNLMEDMEACIVHMDITSL
DIQQVVHLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEKVVMGNK
LLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASADEEVYPYVRTLLHFD
TREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAK
PNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGVVQFEENRLIPMAEKAE
FYQICEFMYEREHLYDKIIDCYLRDPVRKEEVFNYIHNILSIPGYSAKEKQSVWQKAMKH
IEELLLLSPNKAADLIATHFNDQIEGIIKNLQDQFLLFQFLRSLLDPREGINQDMLQISP
CVTEKFIELLCHYSPDQVLETLQVLEFYRLEETIQITQKHLLHEASSYLLEKKGDIHGAF
LVMLEQLRSKLLMLTREIEESTELDLLKDIEDTLVKTIALCQRNSHSLNQQQREALWFPL
LEALMSPQKLSSSTVLCQYSEPLKSLTMQVLNNMAAFIALPSILQRILQDPVYGRGKLGE
IQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASITRGLNPKQDYCCICLQQYK
RRQEMAGEIIVFSCGHLYHSLCLLSKECGIETKGQMRWTCYKCNSSNKGGKLSENFSELK
KGNGASLAQSSSESLLDSQQIQAFDQLCRLYRGTSRLALLTELSRTHGGEKHGLLNVSQG
DPALNSVFQNENFQLHLAPPPLTEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgagagcctcggcgcggaacagggcgcctctctcccggggcccgccgaggag
ctaggggcgctgctagggcaggatgccgcgctgctgccgctgagcggtggggagctggac
cgggagctggagtctaaaagtgacctgatagatgacaaagagtttgatattccccaggtt
gatacccctccaacactggaaagcatattaaatgagactgatgatgaagaggagtctttt
gttcttgaggatccctctcttttaaacattgataatattgacactcactcgtatgacaca
tcttccttggcaagctcagacagtggggacaggacacacttgaaaagaaagaaaaaactt
cctgattttttctctcttcatggatcggttgtccgtctttctcttctgaaaggaatttct
gcccaaatagtatctgctgcagacaaagtggatgctggtttacctactgcaatagcagcg
tcaagtctgatagcagtggggacatcccatggtttagcattaatttttgatccaaaccag
gctcttcggctttgtctgggcagcactgctgttggggctcagtatggggctatctcggct
ctcagtatcaacaatgactgttcaagactactgtgtggctttgcaaaaggacagatcacc
atgtgggatctggctaatgggaaacttttaagatcgataacagatgctcatcctccagga
acagcaattttacatatcaagtttacagatgacccaacgcttgcaatttgcaacgacagt
ggaggctccgtgtttgagctgtcatttaagagagttatgggtgtgagaacatgtgagtct
cgatgtctgttcagtggttccaagggagaagtttgctgtattgagcccttgcatgcaaag
actgaattgagagatcatcctatcacccagtactccctactagcaatggcttccctaact
aagattctagtcattggcttgaaaccgtctttgaaggtgtggatgacttttccctatggt
cgtatggatccctctagtgtcccgctgttggcatggcattttgttgcaatacagaactct
gtgaatcccatgcttgccttctgtcgaggagatgttgttcattttcttttggtgaagaga
gatgactcaggtgcaatacatgttactaagcaaaagcaacttcatctgcgctatgacctc
atcaattttacttggataaactcacgcacagtagtgcttctggacagtgtggagaagctg
catgtgatagatcgccagactcaagaggagctggaaactatagagatttcggaggtgcag
ctagtatataacagcagtcacttcaaatcactggccacaggaggcaatgtcagtcaagca
ttggccctggttggggagaaagcctgttaccaatccatcagcagctgtggtggtcaaatc
ttctatcttggcacaaagtctgttcatgtgatgatgataaggagctggagagagagagtg
gatcaccttctgaaacaagactgtcttactgaggccctggctctagcgtggtcttttcat
gaaggaaaagcaaaggctgtagtaggattgtctggggatgtcagtaagcgaaaggctgtc
attgcagaccgaatggttgaaatcctcttccattatgctgatcgaactttgaagaaatgt
cctgaccagggaaaaatccaagttatggagcaacactttcaggatatggtgcctgtcata
gtcgattactgccttttacttcagcgaactgaccttctgttcagccagatatacgacaaa
ttgagtgagaactcagtggcaaagggtgtttttctggagtgcctggagccttacatttta
agtgataagttgatgggaatgacagctcaagtgatgaaagacttgctgcttcactaccaa
gataagaacctaatggaggacatggaggcctgcattgtgcatatggatatcaccagccta
gacatacagcaggtagttcacctgtgctgggaaaatcatctgtatgatgccatgatctat
gtttacaacagtggaatgaatgacttcattagtccgatggagaaattgttcaaagtcatt
gctcctccacttaatgctgggaagtctctcacagatgagaaagtggttatggggaacaag
ctccttgtgtacataagttgctgtttagcaggccgtgcttatccattgggtgatattcct
gaagatctggtacccttggttaaaaaccaggtgtttgaatttcttatccgtctccactca
gctgaagcatctgcagatgaagaagtctacccgtatgttcgtacgcttctgcactttgat
accagagagttccttaacgttcttgcactgacttttgaagactttaagaatgacaagcaa
gcagtggagtatcaacaaagaattgtggacatcctgctaaaggttatggtggaaaattct
gatttcaccccatcacaagttggctgtctttttacctttcttgcccggcagctggctaag
cccaacaatacattgtttgtaaacaggaccctttttgaccaggtccttgaatttctgtgc
agccctgatgacgattcccgacactcagagagacagcaggtccttttagaactactgcaa
gctggaggggtagtacagtttgaagagaatcgtctcatccctatggcagaaaaagctgaa
ttctaccaaatttgtgagtttatgtatgaacgggagcatctctatgacaaaatcattgat
tgttacttgcgtgatccagtgagaaaggaagaagtgttcaactacatccacaatatccta
tccattcctgggtacagtgccaaggagaagcagtcagtgtggcagaaggctatgaaacac
attgaggagctgctattactgagcccgaataaagcagcagacctgatagccactcacttc
aatgatcagattgagggaatcattaaaaatcttcaggaccaatttttgcttttccagttt
ttgagaagtctccttgacccaagggaaggtatcaatcaggacatgctacagatatctccc
tgtgtcactgaaaaattcattgagttgttgtgtcactacagtcctgaccaggttttagag
acactgcaggttctggagttctacagactggaagagaccattcagattacccagaaacac
ctgctccatgaagcttcctcctacctgctggagaagaaaggagacattcatggtgccttc
ctagtaatgcttgagcaactacgaagcaagttgttgatgcttacacgtgaaattgaagaa
tcaacagaactcgacttattaaaggatattgaagataccttagtgaaaacaattgcactt
tgccagaggaattcacatagtttaaaccagcagcagcgagaggcactctggtttcctctc
ctggaggctttgatgtcgccacagaagctatccagttcaacagtgttgtgtcagtattct
gaacctctgaagagtttgacaatgcaagtgctaaacaacatggctgcatttattgccctt
ccctcaatcttgcagagaattctccaggatccagtttatggtagagggaaacttggagaa
attcagggacttgtactggggatgctggacacatttaactatgagcaaacccttctagag
acaactactaacctcctgaaccacgatctccactggtccttgtgtaacttgagagcctcc
atcactagagggcttaacccaaagcaggattactgctgtatctgtctgcagcaatacaag
agaaggcaagagatggctggtgaaatcattgtgttcagttgtggccatttgtaccattca
ctctgtctgctgagtaaagagtgtggcatagaaaccaagggacagatgagatggacttgc
tataaatgcaactcaagtaacaaagggggaaaactgagtgagaatttctcagagctgaaa
aagggaaatggtgcatctctggcacagtcaagttcagagtccctgttggattcccagcaa
atccaggcttttgaccaactctgtcgactctatcgaggaacctccaggttagctctcctg
acagaattatctcgaactcatggtggtgaaaaacatgggctcctcaatgtatctcagggt
gaccctgcactgaacagtgtcttccagaacgagaatttccagttgcatctcgctccccct
ccactgacagaagagtag
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integrated database retrieval system
