Chelonoidis abingdonii (Abingdon island giant tortoise): 116815530
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Entry
116815530 CDS
T07367
Symbol
USHBP1
Name
(RefSeq) Usher syndrome type-1C protein-binding protein 1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cabi03037
]
116815530 (USHBP1)
Cilium and associated proteins [BR:
cabi03037
]
Primary cilia and associated proteins
USH complex and associated proteins
116815530 (USHBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
TPD52
Motif
Other DBs
NCBI-GeneID:
116815530
NCBI-ProteinID:
XP_032619890
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MEKGELDSISEREEEADVAGVDERAILRYEEHITMLLVTIAQLHSKAERLQQRRTREEDE
YSDQCSEYTASLPRCVQRPQSLAIHPFPMGCMEEGGNSDVFLDLQQAVTSLENAVFSWRS
RAQLLGSAGGQTGAGGPSAAGEEWAQITKTLEELERSLGGLAGLSEDNGSGLWKGAPKAL
GEKTSEASPGLSAEDMSWIKNEIATYAERNAALRVVLGSKEEEISRSKVTLQAFQEEREK
LQRKVKELQDSLLRMETPSQPCSPSASASDAVSPRGSVSPRGEGEPWPFQDPVAMAQSLI
RCFQSCSSTQHLCRLFPQHRPPASESHVREWEARTQQLRGCIERLKGLNQLLSGTLRERK
GHSERLSMLLGQHESNSTALHLAMQYSERCMEAYEVLLPLAGVKLGPWLEPVEEGDTLDK
GEPGACAPNSPGGRTGAMLDEARRFLGRAEPKGEEARSGQAGAAGTHGWKSAPSPGSQGP
GGAEEGILYEYIRRLRAEQASVEVSLLDLGCQAVPGSAGAVIHSNDAIKAMVDEAVRVAG
GVLPRETPRPKMEKPQLLHDLVAIREAMADLKIQLHLAEKETRGLELCTYMHRAQEAAHL
LLIEHLQGELDELRGRCPSSGSSSSGDSTSCSSCLGDVGRQEAEAARPQAALDRETMMLE
LVGTLARSRELRGQAQGLAASLEQRSAASRVQQAQCIGITRDFFQAHSALVLAYRNARRK
QEAQLQRLEAQMGAMGERHREQLRSLTQAVQRLEEQRMAAAGSETFI
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggcgagctggactcaatctccgagagggaggaggaggccgatgtagcaggg
gtggacgagcgggcaatcctgcgctacgaggagcacatcaccatgctgctcgtcaccatt
gcccagctccacagcaaggccgagcggctacagcagaggagaaccagagaggaagatgag
tattcagaccagtgctccgaatacacagcgagccttcccaggtgtgtgcagaggccccag
agtttggccatccatccgttccccatgggctgcatggaagaaggaggcaactccgacgtg
ttcctagatctgcagcaggctgtgacctctctggagaacgccgtgttctcctggcggagc
cgtgctcagctgcttggaagcgctggcgggcagacgggcgcaggcggccctagcgcggcg
ggggaggagtgggcccagataaccaagaccctggaagagctagaacgaagcctggggggt
cttgcgggactctcggaggataacgggagcggtctctggaagggagcacccaaggcactg
ggggagaagacgagcgaggccagcccagggctctcagcagaggacatgagctggatcaag
aatgaaatagccacatacgcagagaggaacgcggctctccgggtggtgctagggagcaag
gaggaggagataagcaggtccaaggtcaccctgcaagcattccaggaggaacgggagaag
ctccagagaaaggtcaaggagctgcaggactcactgcttagaatggagacgccatcccag
ccctgcagcccctcagcatccgccagtgacgctgtcagccccagggggtccgtcagcccc
cgcggggaaggggagccctggccattccaggacccagttgccatggcccagagtctgatc
cggtgctttcagagctgctccagcacccagcacctctgccgcctgttccctcagcaccgc
cccccggcgtcggagagccacgtcagggagtgggaagctcggacgcagcagctgcgaggg
tgcatcgagcggctcaaaggcctgaaccagctgctctccgggacgctgcgggagaggaag
ggccactcggagcggctcagcatgctgctggggcagcatgagtccaacagcacggccctg
cacctggccatgcagtacagcgagagatgcatggaggcctacgaggtgctgctgcccctg
gccggggtgaagctggggccctggctggagccagtggaggagggagacaccctggacaaa
ggagagcctggggcgtgcgccccgaacagccccggcggcaggacgggggccatgctggac
gaggccaggaggttcctggggagagcggagcccaagggcgaggaggccaggtcggggcag
gccggggctgccgggacccatggatggaaaagcgcccccagccccggttcccaggggccc
ggaggggcagaggaggggatcctgtacgagtacatccggcggctgcgagcagagcaggcc
tccgtggaggtctctctgctggatctgggctgccaggcggtgcctggttccgccggtgct
gtgatccacagtaacgacgccatcaaggccatggtggacgaggccgtcagggtcgcaggc
ggggtcctgcccagggagacaccaaggccaaagatggagaagccgcagctgctgcacgac
ttagtggccatcagggaggcaatggcggatctgaagatccagctgcacctggcggagaag
gagacgcgaggcctggagctctgtacctacatgcaccgggcgcaggaggccgcccatctg
ctgctcatcgagcatctgcagggggagctggacgagctgcggggccggtgccccagctcc
gggagcagcagcagcggagacagcaccagctgcagcagctgcctcggggatgtggggaga
caggaggcagaagcggcaagaccccaggctgccctggatcgggagacaatgatgctggag
ctggttgggacgctagcccggagcagggagctgaggggccaagcccagggcctggcggcc
tccctggagcagcgcagtgcagccagccgggtgcagcaggcccagtgcatcgggatcacc
agagacttcttccaggctcacagtgccctggtgctggcctacaggaatgccaggaggaag
caggaggctcagctgcagaggctggaggcccagatgggtgcgatgggcgagcggcacagg
gagcagctgcgctcgctcacgcaggctgtgcaaaggctggaggagcagcgcatggctgcg
gctggcagtgagaccttcatctag
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integrated database retrieval system
