Chelonoidis abingdonii (Abingdon island giant tortoise): 116817179
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Entry
116817179 CDS
T07367
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116817179 (UPF3B)
03015 mRNA surveillance pathway
116817179 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116817179 (UPF3B)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116817179 (UPF3B)
mRNA cycle factors
P-body specific factors
116817179 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
116817179
NCBI-ProteinID:
XP_032622926
Ensembl:
ENSCABG00000017484
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MKEDKENTRPKEKRVPGGPLDLRGGGEPERLERPKDKKETLSKVVIRRLPPSLTKEQLEE
HLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAA
IVEFAPFQKSAKKKNKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARN
KELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEK
LKKFDKCPEKERDKSKDEPKIKLLKKPEKDERDLEKKERFKKLEKENVREEKAAGALSSM
SAKRSDGETKEEKAKKSEDEYGKDYRDRERDFEREREYDRLQREKQRRQDEERRRQKERF
EKEKVFRKREEEVKKEMNLLREKGRKNELPDFTGNIEKAEKITKDDKKEDAAKRDRIRNK
DRPAMQLYQPGVRSRSRLCPYEDIATKSVDQGADKQESETSNTKEEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggagaacactaggcctaaggagaagcgggtgcccgggggccccctg
gacctgagggggggcggggagcccgagaggctcgagcggccgaaggacaagaaggagacg
ctcagcaaggtggtaattcgacgcttgcctcccagcttgactaaggaacaacttgaagaa
catcttcagcctttgcctgaacatgactattttgaattctttgctaatgattccagtttg
tatcctcacatgttttccagagcatacatcaactttaaaaaccaagaagacatagtactg
ttcagggatcgctttgatggttatgtttttgttgatcacaaaggtcaggagtatgctgcc
attgtagaatttgcacctttccaaaaatctgcaaaaaagaagaataagaaaaaagatgcc
aaaactgggactattgatgatgacccagagtataagaagtttttggaaagttacagtgca
gatgatgaaaagttaacatcgactcctgaaacactactagaggaaatagaggcaagaaac
aaagaattaatagctaaaaagacaactccccttctgaacttcttgaaaaacaaacagaga
ctgagagaagaaaaaagagaggagaggagaagaagggaactggaaagaaaaagacaaaga
gaagaagaaaggagaaaatggaaagaagaagaaagaaggaagagaaaagaggcagaaaaa
ctgaaaaaatttgataaatgcccagagaaagaaagggataaatcaaaggatgaaccaaag
attaagctacttaagaaaccagagaaagatgaaagagacttggagaaaaaggaaaggttc
aagaaactggaaaaagaaaatgtgagggaagaaaaggcggctggcgcactaagcagcatg
tcagccaaacgatccgatggagagactaaagaggagaaggcaaaaaaatctgaagatgaa
tatggaaaagattacagggaccgagagagagactttgaaagagagagagaatatgataga
ctgcagcgggagaaacagagacgccaagacgaagagcgtcgtaggcagaaggaacgcttt
gagaaggaaaaagtttttaggaaaagagaagaagaggttaaaaaggagatgaacttactc
agagagaaaggaaggaaaaatgagcttccagactttacaggcaacatagaaaaagctgag
aaaataaccaaagatgacaaaaaagaggatgcagctaagagagatcgcatcagaaataag
gatcgtccagcaatgcagctataccagccaggagttcgaagtcgaagtagactgtgtcct
tatgaagacattgctacaaagtctgttgaccaaggagcagataaacaggaaagtgagacc
agtaatacaaaagaagaggagtga
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