Chelonoidis abingdonii (Abingdon island giant tortoise): 116817221
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Entry
116817221 CDS
T07367
Symbol
NUP98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116817221 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116817221 (NUP98)
03036 Chromosome and associated proteins [BR:
cabi03036
]
116817221 (NUP98)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116817221 (NUP98)
Chromosome and associated proteins [BR:
cabi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116817221 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
116817221
NCBI-ProteinID:
XP_032622999
Ensembl:
ENSCABG00000017637
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MFNKSFGTPFGGSAGGFGTTSTFGQNAGFGATGGGAFGTSAFGSNNNTGSLFGNTQTKPG
GLFGSSTFSQPATSSTSTGFGFGTSTGTSNSLFGTASTGGGLFSSQNNAFAQNKPAGFGN
FGTSTSSGGLFGTTNTASNPFGGTSGSLFGPTSFTAAPTGTTIKFNPPTGTDTMVKSGVS
TNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPSNPAVAAAGLFGSSTATSSAATGL
FGSSTTNAGFSYGQNKTAFGTSTTGFGTGTAGSLFGQQPQQTTSLFSKPFGQATTTQNTG
FSFGNTSTLGQPNTNTMGLFGATQASPSGGLFGTAANTNAATGFGTGTGTGLFGQANTGF
GVGGSTLFGKPAGFGTTTTSAPSFGTTTGSGLFGNKPTLTLGTNTNTSNFGFGASTAGNS
IFGNKPAAGTLGAGLGTGFGTALSAGQTSLFGNTQPKLGGTLGTGAFGAPGFNTSTATLG
FGAPQPAVALTDPNVSAAQQAALQQHFNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNP
AAQKALTTPTHYKLTPRPATRVRPKALQTAGSSKSQLFDGLDDDEPSLSNGAFMPKKSIK
KLVLKNLNSSNLFSPVSREAEDLEPPSEYPENGERLNFLSRSVDENHRQEGEREEEDDHH
EVTRFYTNPIAKPIPQTPENAVHKHQNNVDDTIVALNMRVALRNGLEGSSEDASFHDESL
QDDREEENENVYSLHPAGIVLTKAGYYTIPSMEDLAKLTTDRGECIVTDFTIGRKGYGSI
YFEGEVNLTNLNLDEIVHIRRKEVIVYPDDDQKPPIGEGLNRRAEVTLDGVWPTDKTSRC
LIKSPERLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVAHFSKYGLQDSDEEEEEH
PSKADAKKLKTAQVPPQGQLVPQQMALNGKPTSPSQSPEVEQLGRVVELDSDMADITQEP
TQDSILEDSITEEPELVPASTHIASSLGINPHVLQIMKASLLADEEDVDLILDHHFGKQP
TKMDTSQEICSPRLPISALQGQKRHSSVGGLLQSKFASVSFLQSASLPDFHGPRASSLGN
PPSAASWTGLSPLSSAFSMPSTAPEVQLKTMGVCRQQGLIPLQKSVIYGKGRLLMDMALF
MGRSFRVGWGPSWTLVNSGDKLSGSSEPKDLRNDSMEYGFLPTPVAPKSLSESPFKVHIE
KLTLEQRKTDGDQQLYLIPLEIKLKHSTVHVDERCPLLAANPGVSAIHDYADWVRDFCGD
SAEIEPVVKYWCLTWMLCEAIWGHLKELEASLEEPSEYTVTLERRKAFSRWLSQTAAARI
EEEVSLSQHENHIEAVFSYLTGKRISEACRVAQQSGDHRLALLLSQLIGSQQVRELLTMQ
LVDWHGLQADCFIQEERLRIFALLAGKPVWQLSERKSINVCSQLDWKRSVAIHLWYLLPP
TASISKALDMYEAAFQNTPECEKYACCPLPPYLEDSGCVLEEDDSTERPLRDVCFHLLKL
YSDRCYDLNQLLDPRSITSDPLDYRLSWHLWEVLRALNYTHLSEQRQGVLNASYAAQLES
EGLWEWAIFVLLHTSNTHTREKAVREFLNRHCMLSETPESWTKETFLTQKLCIPPEWIQE
AKAVRARMEGDKHKEALYLFKAGHWNQCHKLVIRHLASDAIINENYNYLKGFLEDLSPPE
RSTLIQDWDAAGLVYLDYIRVIEMLDRIQQLDCSAYELERLHTKVTSLCNRIEQIQCHNA
KDRLAQSDMAKRVANLLRVVLSLQHSPEPASDSMPDVQRVPLRLLAPHIGRLPMPEDYAL
EELRNLTQSYLRELTVVTQ
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatcatttggaactccgtttggaggcagtgctggtggctttgggactacg
tcaacatttggacaaaatgcaggctttggtgctaccggtggaggagcatttggaacatca
gccttcgggtcaaacaataacacaggaagcctctttgggaacacacagactaaaccagga
ggattgtttggttcaagtacttttagccaaccagccacctcctccacaagcactggcttt
gggtttggaacatcaactggaacttccaacagcttgtttgggactgccagcactggtgga
ggtctcttttcttcccagaataatgcctttgctcagaataaaccggctgggtttggaaac
tttggaacaagtaccagcagtggaggtctctttggaaccactaacactgcctccaaccct
tttgggggtacatctggctctctctttgggccaactagctttactgctgctccaactggg
actaccattaaatttaatccaccaaccggcacagatactatggtaaaatctggagttagc
actaacatcagcactaagcaccagtgtattactgctatgaaggagtatgaaagcaaatcc
ctagaggaacttcgtttggaagattaccaggcaaacaggaaagggccctcaaatccagcg
gttgcggcggcggggttatttggatcctccacagctacatccagtgcagctactggactg
tttggctcctccaccactaatgcaggtttttcatacggacagaataaaacagcttttgga
accagtacgactggctttggaacaggaacagcagggagcctttttggtcagcagcctcaa
cagactaccagtctgttcagcaaaccatttggccaggccaccacaacacagaacactggc
ttttcttttgggaacaccagcactcttggacaaccaaatacaaacacgatgggtttattt
ggggcaacccaagcctcgccatctggaggcctttttggcacagctgccaacacaaatgct
gccactggatttggaacgggaacgggaactggtctctttgggcaagccaacacaggattt
ggtgttggcggttcgaccctgtttggtaagcctgctggatttggaaccaccacgaccagt
gctccttcgtttggtacaactactggcagcgggctctttggtaacaaaccaaccctgact
ttaggaaccaatacaaatacttccaattttggttttggtgcgagcactgctgggaatagt
atctttggaaataagcctgcagctggaactctcggcgctggacttggaacaggatttgga
acagctcttagtgcagggcagacttcactgtttggaaacacccagcctaaattaggtgga
acactgggaacaggagcatttggagcgcctggattcaatacatcaacagccaccctgggc
tttggagctccccagcctgctgtggcattgacagacccaaatgtttcagctgcccaacaa
gcagctctccagcagcacttcaatagcttgacctactcaccctttggagattctcctctc
ttcagaaaccctatgtctgacccaaagaagaaagaagagagactgaaaccgactaatcca
gcagcccagaaggctttgactacgccaacccattacaaactgaccccgcgaccagcgacc
agagtgcgaccaaaagctttacagacagcgggatcttccaaatctcaactctttgatggg
ctggatgatgacgagccatctctatctaacggtgcattcatgcccaagaagagcatcaag
aagctggttttgaaaaatctcaacagcagcaatttgttttctcctgtcagtcgtgaagct
gaagatctggaacctccatctgagtatccagagaatggagagcggctcaactttctatca
agatctgttgatgagaaccacagacaggagggtgagcgagaggaagaggatgatcaccat
gaagtgactagattttacactaacccgattgccaaacccatcccgcaaaccccagagaat
gcagtgcacaaacaccagaataatgtggatgataccattgtggctctgaatatgcgggtt
gccttgcggaatggcctggaaggcagcagtgaagatgcttcatttcatgatgagtcgctg
caggatgaccgtgaagaagagaacgagaatgtttatagtcttcacccagcaggaattgtc
ctaacaaaagctggctactacaccatcccgtctatggaggatctagctaaacttaccact
gacagaggagagtgtattgtgactgatttcactataggtcggaaaggttatggatcaatt
tactttgaaggagaggtaaatctaactaacttaaatctggatgagattgtgcacatccgc
aggaaagaagttattgtctatcctgatgatgaccagaagccacctattggtgaaggttta
aatagacgagctgaagttacattggatggagtttggccaacagataaaacatctcgctgc
ttgataaagagcccagaacgactagcagatatcaattatgaaggcagactggaggctgta
tctcggaagcagggagcccagttcaaagaataccgtccagagactggttcttgggtgttc
aaggtggctcacttctctaaatatggcttgcaagattctgatgaggaagaggaggagcat
ccttcaaaagcagacgcaaagaagttaaaaactgcccaagtgccacctcaggggcagctg
gtaccccaacaaatggctctaaatggcaagccaacatctccatctcagagcccagaagtg
gaacagctgggaagagttgtggaactggacagtgatatggctgacatcacgcaggaacca
actcaggattcaatactagaagatagcattacagaagagccggaactggtgcctgcttcc
acgcatattgcatcttcacttggtataaacccccacgtgttacagatcatgaaagcttcc
ttgctcgctgatgaagaggatgtagacttgatcctggaccatcactttggcaaacagcct
acaaaaatggatacttctcaagagatctgctctcccaggcttcctatttcagcattgcaa
ggacagaaaagacactcctcagttggagggctgctgcaatcaaaatttgcaagtgtgtct
ttcctccagagtgcttctctgccagattttcatggaccaagagcttcctctttaggcaat
cctccatctgcagcctcttggactgggctttccccactatcctctgcattctccatgccc
agcacagccccagaggtgcagctgaaaacaatgggtgtctgtaggcagcaggggctaata
cctctgcaaaaatctgttatttatggaaaaggaagactcctaatggatatggcactcttc
atgggacgctcatttcgtgttggttggggacccagttggactcttgtaaatagtggagat
aaactgagtgggtcaagtgagcccaaggatcttcgcaatgactctatggaatatggattc
ttgccaactcctgttgctcctaaatcactttcagaatctcccttcaaggttcatatagag
aagctgaccttagaacaaaggaagacagatggggaccagcagttatacctcatacctctg
gagataaagctcaaacacagtactgtccatgtagacgaacgttgtcctcttttggcagcc
aacccaggagtgtctgccatccatgactatgctgactgggttagagacttttgtggagac
tcagctgaaatagaacctgtggttaagtactggtgtttgacatggatgttgtgtgaggca
atctggggacacctgaaggagttggaagccagcttggaggagcccagtgagtacactgta
accctggagcgcaggaaagccttctctcgctggttatcacagactgcagcagcacgaatt
gaagaggaagtctcactgtcccagcatgagaatcacatagaggctgtatttagctacctt
actgggaagaggatcagtgaggcttgtagggtggcacagcagtcaggagatcacaggctt
gccctactcctctcccagttgataggcagccagcaggttcgggagctcctcacaatgcag
ttagtggactggcatggattgcaggcagactgcttcatccaggaggagagattgcgcatc
tttgctctgctggctgggaagcccgtgtggcagttgtctgagagaaaaagcattaatgtg
tgctcacagctggactggaagcgttctgttgctatccacctctggtatctgcttccgcca
acggcttctatttccaaggcacttgacatgtatgaggcagcattccagaacaccccggag
tgtgagaaatatgcctgctgtcccttgcctccctacctagaggattctggctgtgtactt
gaggaagatgacagcacagagagacccctgagagatgtctgctttcacttgttaaagctc
tacagtgacagatgctatgatctcaatcagctgcttgaccccagaagtattacttccgac
cccttggactaccgtcttagttggcacctgtgggaagtacttagagccttgaattatact
catctatcagagcagcgtcaaggagtgctgaatgccagctatgctgcccagctcgaaagt
gaaggactctgggaatgggccatttttgtactgttgcatacatccaatacacacacacgt
gagaaagcagtgcgtgaattcttaaaccgccactgcatgctgtcggaaacgccagaatcc
tggacaaaggaaactttcctgacacaaaagctctgcattccaccagaatggattcaagaa
gctaaggcagttcgggcaaggatggagggagataagcataaagaggccctctacttgttc
aaagctggacactggaaccagtgtcacaaactggtcatcaggcacttagcctcagatgct
attattaatgaaaactacaactacctgaaaggattcctagaagatttgtcccctccagag
cgaagtacgctcatccaggactgggacgcggcggggctggtttacttggactacatccgg
gtcatcgagatgcttgacaggattcagcagctggattgttctgcatacgagttggagagg
ttacataccaaagtgacatctctatgcaataggatagaacagatacagtgccacaatgcc
aaggaccgattggctcagtctgatatggccaaacgtgttgctaacctgctgcgagtggtc
ctgagcctacagcattctcctgaacctgcctctgactccatgcccgatgtgcagcgagtc
ccacttcgcctgcttgctccccacattggccggcttcccatgccagaggactatgccttg
gaggagctgcgcaatctcacgcagtcgtatctacgagaactgactgtggtgactcagtga
DBGET
integrated database retrieval system
