Chelonoidis abingdonii (Abingdon island giant tortoise): 116818540
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Entry
116818540 CDS
T07367
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cabi04147
]
116818540 (COL18A1)
00535 Proteoglycans [BR:
cabi00535
]
116818540 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116818540 (COL18A1)
Exosome [BR:
cabi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116818540 (COL18A1)
Proteoglycans [BR:
cabi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116818540 (COL18A1)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116818540 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
116818540
NCBI-ProteinID:
XP_032625403
LinkDB
All DBs
Position
Unknown
AA seq
1561 aa
AA seq
DB search
MAPAEQRLCLLLLLTCCCSLAEAWVLNWLWGTQKNPTVTTLPPTESQTTELFTSPVATTT
QAAVPAITQPGDQVWSTLSVLRQAPAMDTAVPALAKPAMPQGKEENIAGVGAEILDVAEG
IRSLVQLWDERTSQRTGNTGDPTAVAPPTNPPTSLAAPNSAMGLADHGNMTANSTGDGHS
LLGTGQPEASLPTPAGPLLAWNRTQALLQKPAAALPEHFSTEVSLLQLIGDPPSEQITQV
NGPDNTHAYVFGSDANTGQVARYHLPSPFYRDFSLLFHVQPTTNKAGVLFAITDASQTVI
YVGVKLSAVQDRKQQIIFYYTEPGSESSYAAATFSVPSLVNEWTRFAISVEDDEVVLYLN
CEEFHRVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGMIADLKVTGDHQAADLQCEEQ
DEDTDVASGDFGSGVEERPHLSGREQGIPAVSRLPEPPPVTSPPTAGETVRKVSVGSQLP
TEQIKVEGLQEVSTGARVGAKGEKGAPGEKGERGPKGDSGTGGVLAADSTKGDKGEKGDL
GIKGSAGFGYPGSKGQKGEPGAQGSPGPAGPPGPPGSTLQRLDGSVVEQVAGPPGPTGPP
GPPGKDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKGEPGVGARGPPGPPG
PPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGLPGEPGRFGMNS
TELPGPPGLPGLPGRDGVPGAQGPPGPPGKSGLAGQPGLRGERGDPGDLGLPGAPGPKGG
KGEMGLAGAPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEAGFGDMEGSGMPVLSAVP
GERGPEGPQGPLGLPGLKGDAGSPGLPGLPGQKGDHGAPGVDGRPGLEGFPGPQGPKGDK
GSQGAKGERGQDGVGSPGPPGLPGPPGQVIYALGEEKALASLPGPEGREGHAGFPGQVGP
KGDPGDPGFPGTPGPKGEKGEPGVIIGPDGTGISASTKGDKGEQGLVGPMGPAGPHGRPG
QKGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGPPGPPGAPGSVASIYDNNAFSESG
PPGPPGLPGYQGAPGQKGERGETGAPGPPGQFPYGLNEFGSTFRGEKGDRGDPGLKGEKG
EPGEGGLYGPSVSGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPGIGYEGRQGPPGPPG
PPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGSLTSSGLRILPAYQSMLSTAQEVPEG
WLIFVQDREELYIRVRSGFRRVRLEEHTSISSPGLDNEVYDKPPTVHYSHGGTVSSGFLH
PHREHNPSSTARPWRADDSIANHHRLPDHSPHGAQPQQEPLDSFSPNRRGESTPSAVHRH
HDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLTGTFRAFLSSRLQDLYSIVRR
ADRSGVPIVNLWDEVLFNNWEALFSGTEAQFRAGVRILSFDGRDVLRDSAWPQKNVWHGS
DAKGRRLTESYCETWRTDDSVVTGQASSLGSGKLLEQKVSSCRNAFIVLCIENSFMTSSK
K
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctgagcagcgtctgtgtctcctgctgttgctaacctgctgctgctccttg
gcagaggcatgggttttaaactggctttgggggacccaaaaaaatccgacggtaacaacc
ctgccccccacagagagccagacgacggaactgtttacctctcctgtggccaccacaaca
caggctgctgtgccagcgatcacacagccaggggaccaagtatggagcacgctctcagtc
ctgaggcaggcaccagccatggacacagctgtccccgctctggcaaaacctgccatgccc
cagggcaaggaggagaacattgcaggggtgggggctgaaatcctggacgtagcagagggc
atcaggagcctggtccagctgtgggatgagaggaccagccagaggaccgggaacacaggg
gatcccacagctgttgctcctccgacaaaccctcccaccagtctggctgctccaaactct
gcaatgggactggctgaccatgggaacatgactgccaactcgaccggggatggccacagc
ctgctggggaccgggcagccagaggcttcacttcccacgccagcggggcctctgcttgcc
tggaacaggactcaggcactcttacagaagcctgcggcagctcttccagaacatttcagc
acagaagtcagtcttttgcagctgattggagatcccccatcggagcaaataacccaagtc
aatggccccgacaacactcacgcctatgtctttggatcagatgccaacaccggtcaagtg
gcccggtaccacctgcctagccccttttatagagacttctcactccttttccatgttcag
cccaccaccaacaaggccggcgtgctctttgccatcacagatgcctcgcagacggtcatc
tatgtcggagtgaagctctctgctgtgcaggacaggaagcaacagatcatcttctactac
acggagccgggctccgagagctcatatgcagctgcaacattctccgtgccttccctagtg
aacgagtggactcgctttgccatcagtgtggaggatgatgaggtggttctgtacctgaac
tgtgaggagtttcaccgggttcgctttgagcgctctcccgatgagatggaactggaggat
gggtctgggctctttgtggctcaggctggaggggctgatccagataaataccaggggatg
attgcagacctgaaagtgacaggtgatcaccaggcagctgatctccagtgtgaggagcag
gacgaggatactgacgtggcatctggagattttggaagtggtgttgaagaaaggccccat
ctatcaggaagggagcaggggatcccggctgtgtcgcggctcccggaacctcccccggtc
acttctccccccactgctggggagacagtgaggaaagtaagcgtgggctctcagctgcca
actgagcaaatcaaagtggaaggactacaggaagtttctacaggagctagggttggtgca
aaaggtgaaaaaggggccccgggagagaaaggcgaacgtggcccaaaaggagactccgga
accggcggggttctagcagccgacagcaccaaaggcgacaagggagaaaaaggagacctg
ggcattaagggaagtgcaggatttgggtatcccggctctaagggccagaaaggggaacca
ggtgcccagggatctcccggccccgctggcccgcctgggccgcctggctctacgttgcag
cgcctggacggctctgtggtggagcaggtcgccggacctccaggaccaacaggtccccca
gggccacccgggaaagatggcctccctggcaaggacggcgagcccggtgatcctggtgaa
gatggaaaacctggtgacgttgggccccagggattccctggaactcccggagagcctggc
ctcaaggggcagaagggtgagcccggagtcggcgcaagaggcccccctggaccgcctgga
ccgcctgggacaccgggtctctcttccaaacaggacaagctgacgttcattgacatggaa
ggctctgggtttggaggcgatctggaaagcttccggggcccccgaggcccaccagggccc
cccgggcctcctggggtgcccggcctgccaggagagccaggaagatttgggatgaacagc
actgagctgccaggaccccccggcctccctggcctgccaggcagagatggtgtccccgga
gcccaaggtccaccaggtcctccaggaaaaagtgggttggctggccagcctgggcttcga
ggagaacggggggacccaggagacctaggcctccccggagctcctggacccaagggcggt
aagggtgagatggggctggccggagccccaggggaaaccgggctggcaggccttcctgga
ccaatgggaccacgaggaccaccaggtcccccaggccctgctggacctcctgggccaggc
tacgaggccggatttggagacatggaaggctcggggatgcccgtcctttctgccgttcct
ggagagcgcggacccgaagggccacaggggccactgggactccccggactcaagggggac
gctggcagccctgggctgcctggcttgccaggacaaaagggggaccacggtgctccgggt
gtggatgggcgcccagggctggaaggtttcccaggacctcagggacccaagggtgacaag
ggaagccagggggctaaaggtgaacgaggccaagatggagtgggctccccaggcccccct
gggctccctggacccccggggcaggtcatctatgcattgggcgaagagaaagcattagct
agtttgccaggccctgagggcagagaaggccatgctggcttcccgggccaagtgggacct
aaaggagacccaggagacccaggtttcccaggcaccccaggaccaaagggtgagaaagga
gagcctggagtgatcatcggcccagatgggacgggcatctcagctagcacgaaaggagac
aagggtgagcaggggctggtgggacccatgggcccagcaggcccgcatggacgacctgga
cagaagggggaaattggctttcctggcagaccgggtcgtcccagcatgaatgggctgaag
ggcgagaaaggggaccctggagggcttggcttgcagggtcctccaggtcccccggggccc
ccaggtgcccctggcagtgtagcgtccatctacgacaataacgcatttagtgaatcgggc
cctcccggccctccaggattgcctggctaccagggtgccccaggacaaaagggtgaacga
ggcgagacaggtgccccagggcccccaggccagttcccctatggtctcaacgaatttggt
tccaccttccggggtgaaaaaggagatcggggggaccctggactgaaaggagagaagggg
gagcccggcgagggaggactgtatggaccaagcgtctctggacctccaggtcctcagggc
tatcctggccttccgggtcccaagggggacagcattagaggcctgcctggacccccaggg
cctcagggaccccctggcattgggtatgaggggcggcagggtccccctgggccccccggg
cctcccgggcccccctcctttccaggaccccacagacaaactgtcagcatccctggccca
cctgggcctccagggccaccaggacctccagggaccagcgggtctttgacctcttccggg
ctgcggatcttgccggcatatcagtccatgctgagcacggctcaggaggtgcccgagggc
tggctgatcttcgtacaggacagagaagagctgtacatccgggtgcggagcggcttccgg
agagtccgtctggaggaacacacgtccatctccagccctgggctggacaacgaagtgtac
gacaagcctccaactgtccactactcgcatggcggcactgtctcctccggcttcctgcac
ccacaccgagagcacaacccctcctccacagcccggccctggcgagcggacgacagcatc
gccaaccaccaccgccttcccgaccactcgcctcacggcgcccagccccagcaagagcca
ctggacagcttctccccaaatcgccggggggagagcaccccctctgccgttcacaggcac
catgacttccagcccgccctccacctggtggcgctgaacgccccgctgagcggcagcatg
cgtggcatccgtggagccgacttccagtgcttccagcaggcccgggcagttgggctgacg
ggcacattccgagccttcctgtcctcccggctgcaagacctgtacagcattgtgcgcaga
gccgaccggagcggggtgcccattgtcaacctctgggatgaagtgctgtttaacaactgg
gaggcgctgttctcgggcacagaggctcagttccgagctggtgttcgcatcctctcgttt
gatggaagagatgtactgagagactctgcgtggcctcagaagaatgtctggcatggctct
gacgccaagggccgccggctcacagagagctactgcgagacatggaggacggacgatagc
gtggtgacgggccaagcctcctcgctgggctcggggaagctcctggagcagaaggtgagc
agctgccggaatgccttcatcgtcctgtgtatcgagaacagcttcatgacctcttccaaa
aagtga
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integrated database retrieval system
