Chelonoidis abingdonii (Abingdon island giant tortoise): 116819753
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Entry
116819753 CDS
T07367
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116819753 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116819753 (MSH2)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116819753 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
116819753
NCBI-ProteinID:
XP_032627624
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MASVAPGSAAESVWPEGSGAEGGFVRAVLALPDKPDTTVRFFERGEHYTVHGGDALLAAR
EVFRTRGVIRLLAGGPGNQKLESVVLSKMNFESFLRDLLLVRQYRVEIYKNKAGSKSTKE
NDWYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLYTADGQRVVGVGYVDTTLRKLG
VCEFPDNDQFSNLEALLVQIGPKECVLPGGETAGDMGKLRHIIQRGGIMITDRKKAEFTT
KDIVQDLNRLLKSKKEEQVTSATLPEIEKQVAVSSLSAVIKYLELLSDESNFGQFELTSF
DLSQYMILDNAAVRALNLFQSSGENANSTQSLVGLLNKCKTPQGQRLVNQWIKQPLTDKN
RIEERLNLVEAFVVDTELRQCLQEELLRRFPDLNRLAKKFQRQVATLQDSYRMYQAINQL
PNVVQALEKHEGAHQMLLLAVFVMPLNDLNSDFSKFQEMIETTLDMNKVENHEFLVKASF
DPNLTELREKMNKLEESMQSLLKTAARELGLEAGKNIKLDSNSQLGHYFRITCREEKVLR
NNAKYKILDTQKNGVKFTNSKLSSFNEDYVRSREEYEEAQEAIVKEIINIASGYVEPIQT
MNDVIAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGSRHPCIEVQDDIAFIPND
VNFEKGKQMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSAEVTIVDCILARVGA
GDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIACKI
CAFCMFATHFHELTALANQVPTVNNLHVTALTTDEMLTMLYRVKKGVCDQSFGIHVAELA
AFPKHVIESAKEKALELEEFQTIGKPEESEGEPAAKRRYREKEEGEKIIQDFLCKVKALP
LRDMSEEDIRTKLKQLKAEVLAKNNGFVNDIVSRTKVTP
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtggcgccggggtctgcagcggagtcggtgtggccggagggctcgggcgcc
gagggtggtttcgtgcgcgcggtgctggcgctgcccgacaagcccgataccaccgtgcgc
ttcttcgagcgcggcgagcactatacggtgcatggcggggacgcgctgctggccgcccgc
gaggtcttccgcacccgcggcgtcatccggctgctggcggggggcccaggcaatcagaaa
ctcgagagtgttgtgcttagtaaaatgaactttgaatcttttctgagagatctacttctg
gttcgtcagtacagagttgaaatttacaagaacaaagcaggcagtaaatctaccaaggag
aatgactggtatttggcatacaagggttctccaggtaaccttgcccagtttgaggaaatt
ctgtttggcaataatgacatgtcgactgccattggtgttgtgggtgttaagctatatact
gctgacggacaaagagtagttggagtggggtatgttgacactacactcaggaagctgggt
gtctgtgagtttccagataatgatcagttctcaaaccttgaagctctgctggttcaaatt
ggacctaaggaatgcgtgctaccaggaggagagactgctggggatatgggaaaactacga
cacatcattcaaagaggaggaatcatgattacagaccgaaaaaaggctgaattcacaaca
aaagatattgtccaggatctcaaccgcttactaaaatcaaaaaaggaagagcaagtgact
agtgcaacgttaccagagatagaaaaacaggttgctgtttcatccttgtcagccgttatc
aagtatttagagctcttgtcggatgaatctaacttcggacaatttgaattgactagcttt
gacctcagtcaatatatgatactggataatgcagctgttcgagcccttaaccttttccag
agttctggtgaaaatgccaacagtacacaatcattggttgggttattaaataagtgcaaa
actcctcaaggacaaagactggttaatcagtggatcaaacagccacttacggacaagaac
agaatagaagaaaggttaaatttggttgaggcctttgtggtagacacagagctacggcag
tgccttcaagaagagcttctacgtcgttttccagatctcaaccggctagccaagaaattt
caaagacaagtagcaaccctgcaggacagttaccgaatgtatcaagctattaaccaactg
cctaatgttgtacaggcactggaaaaacatgaaggagcgcatcagatgttattgctagca
gtatttgtaatgcctcttaatgatctcaactctgacttctccaagtttcaggaaatgata
gaaacaactttagacatgaacaaggtggaaaatcatgaattccttgtgaaggcttctttt
gatcctaatctgaccgagctgagagagaagatgaacaaactagaggagagcatgcagtct
cttctaaagactgcagccagagaactaggcttggaagctggcaagaacatcaaattggac
tccaattcacagttaggacattacttccgaattacctgccgggaagaaaaagtcctgcgg
aacaatgcaaaatataagatcttagatacccagaagaatggtgtgaaattcacaaatagt
aaattgagctcctttaatgaagactacgtaagaagcagagaagagtatgaagaggctcag
gaagccattgttaaagaaatcattaatattgcttcaggatatgtagagccaatacagaca
atgaatgatgtgatagctcagttagatgctgttgtcagttttgctcatgtatcaaatgga
gcacctgtgccgtatgtacgtccggtcattctggaaaagggacaaggaagaattgtgctg
aaaggttccagacacccttgcattgaagttcaagatgacatagcattcatccccaatgat
gttaactttgagaagggcaagcagatgttccatattattactggtcctaacatgggaggg
aaatcaacatacattcgccaggctggagtgatagttctaatggcccaaattgggtgcttt
gtaccatgtgactcagcagaagtgactattgtggattgtattctggctcgggtaggagca
ggagacagtcagttgaaaggtgtctcgactttcatggcagaaatgttagaaactgcttca
attcttcggacagcatctgaaaactctttaataatcattgatgagttgggaagaggaact
tcaacatatgatggatttgggttggcatgggctatttcagaatatattgcctgcaaaatt
tgtgccttctgtatgtttgctacgcattttcatgaactgacagcacttgctaaccaagtg
ccaactgtgaataatttacatgtcactgcattaaccactgatgagatgctgactatgctt
taccgtgtcaagaaaggtgtctgtgatcagagttttggaatacatgtagcagagcttgcc
gcttttccaaagcatgtaatagagagtgcaaaagagaaggctctggagctagaggagttc
caaactattggaaaacctgaggaatctgaaggagagccagcagctaagagacgctacaga
gaaaaagaggaaggtgaaaaaataattcaggatttcctttgcaaagtgaaagcattgccc
ttgagagacatgtcagaggaagacatcagaaccaaactgaaacaactgaaagctgaagtg
ctggcaaagaataacggttttgtgaatgacattgtttcccgaacaaaagttactccatga
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