Chelonoidis abingdonii (Abingdon island giant tortoise): 116819936
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Entry
116819936 CDS
T07367
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116819936 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116819936 (MSH6)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116819936 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
116819936
NCBI-ProteinID:
XP_032627934
Ensembl:
ENSCABG00000008858
LinkDB
All DBs
Position
Unknown
AA seq
1370 aa
AA seq
DB search
MSRQSTLLRFFPKAQAPGVGPTQAPSPAAAPRRRGWASSEAAGDEAALAPGGGAEEMGRS
GGVEAQGARKERTKAARAPSVSCDYSPGDLVWAKMEGYPWWPCLVYNHPTEGTLVRAKGK
SSRVHVQFFDDPPTRGWVSIKYLKPYKGSAVRETQRGGMFYSSKPEIKRAMEMADDAMRK
DKTKRLELAVCNEPSDTEDEEEMEYIRSRKLAEQSGHWLIKVSESASGNSEDYDSEEEEK
KKKLLASRWRSSGKAKKRRVVDSDSDSEGSDEEFKPDAKDEASSDEASSGMGEGESASSE
TDTKMDVDSPVKVPSKRKRETDRKPAKRNSLENDLSETPKRAVPVSLETKSRLTSFAAPE
NFESQPNVSSSSIWEHDKLEWLQEGKKRDGCRRRQSDPHYDPCTLHVPEDYLNKCTPGMR
KWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLVFMKGIWAHSGFPEIAFGRFSD
VLVQKGYKVVRVEQTETPEMMEARCRSLSHPTKFDRVVRREICRIITKGTQTYSVLDGDP
SENLNKYLLSVKEKVEDSSGHHRAYGVCFVDTSVGKFNVGQFSDDRHCSRFRTLVAHYTP
VQILFEKGNLSTDTHKILKGSLSSSMQEGLISGSQFWNASKTLKTLIEEGYFEDRQNVDN
RFILPPVIKSMTSESDSLGLTPGENCELALSALGGCIFYLKKCLIDQELLSLANFEEYVP
VDADVAKAKGSSSFFAKTNQRMVLDGVTLANLEILQNGTTGTTEGTLLERIDVCCTPFGK
RLLKQWICAPLCNPHSINDRLDAVEDLLAVPDKMFEVSELLKKLPDLERLLSKIHSIGSP
LKSETHPDNRAIFYEETRYSKKKITDFLSALEGFKIMLETIAIMEEIAADFKSKILKQLV
TLKSKNPEGCFPDLSTELKRWDTAFDHNEARKTGVITPKAGFDPDYDKALKDIIDIEENL
REYLDKQRKRLGFKAMLYWGAGKNRYQMEIPENAISHNLPEEYELKSTRKGYKRYWTKEI
EKMLAEMVNAEERRDAALKDCMRRLFHNFDKNSKDWQTAVECFAVLDVLMCLTNYSQGGD
GPFCRPVILLPEQNTPPFLELKGSRHPCITKTFLGDDFIPNDIVIGSKNEDEDDNSEAYC
VLVTGPNMGGKSTLMRQAGLLAVMAQLGCYVPAEACRLTPIDRVFTRLGASDKIMSGEST
FFVELSETSSILRHATEHSLVLVDELGRGTATFDGTAIAGAVVKELAENIKCRTLFSTHY
YSLVEDYSHSAAVRLGHMACMVENESEDPSQETITFLYKFIRGACPKSYGFNAARLANIP
EEVIQKGHRKARDFEKITVSLRLFRHLCLVAENAAGDKAVPKLMTVINNL
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaaagcactctgctccgcttcttccccaaggcccaggcgccaggcgtcggt
ccgacccaggccccttcccctgcggccgcaccgaggcggaggggctgggcctccagcgag
gcagccggggatgaggcagccctggctcccggcggcggcgcggaggagatgggacgatcc
ggcggagtcgaggcccagggggcgaggaaggagagaaccaaggccgcccgggcccccagc
gtctcctgtgattattcacctggtgatttggtttgggccaagatggaagggtacccctgg
tggccatgtcttgtatacaatcacccaactgaaggaacactagtcagagcgaaaggaaaa
tcctctcgtgtacatgtacaattttttgatgaccccccaacaaggggctgggttagcatt
aaatacttaaagccatataaaggctcagcggttagggaaacacagaggggaggtatgttt
tatagttcaaagcctgaaattaaaagagcaatggaaatggcagatgatgctatgcgcaaa
gataaaactaagcggcttgagcttgcagtgtgcaatgaaccttcagatactgaagatgag
gaagagatggagtacatcagaagcaggaagcttgccgaacagtccggccactggctgatc
aaggttagtgaaagtgcttcaggcaacagtgaagattatgatagtgaggaggaggagaaa
aaaaaaaagctgctggcaagcaggtggagaagtagtgggaaagccaaaaaacgaagagtg
gtggactctgacagtgacagtgaaggttcagatgaagagtttaagccagatgccaaagat
gaagcaagcagtgatgaagcaagcagtggaatgggcgaaggtgaatctgccagttccgag
acagacacaaagatggatgtagatagtcctgtgaaagtcccttctaaacgaaagagagaa
actgaccgcaaacctgctaaaaggaatagcttggaaaatgacctttctgaaacacccaaa
agagcagtacctgtttcattagaaaccaaatcaaggctgacctcttttgcagcgcctgaa
aactttgagtctcagccaaatgttagcagttcttctatatgggaacatgataaacttgaa
tggcttcaggaagggaaaaagagagatggatgtagaagacgacaaagtgatcctcattat
gacccatgtaccctccatgtgccagaggactaccttaacaagtgtaccccaggaatgcgg
aaatggtggcagctaaagtctcagaactttgatgctgtaatcttctacaaagttgggaag
ttctatgagttgtatcatatggatgcagtcactggcgtaaatgaactgggactggtattt
atgaaaggtatttgggctcattcaggttttccagaaattgcatttggcagattctctgat
gttctggtacagaagggttacaaagtagttcgggttgagcagacagagactcctgagatg
atggaggcacgctgcagatccctgtcccacccaacaaagtttgatagggttgtacgcaga
gaaatatgcaggataattaccaaagggacacagacctacagtgttctggatggagaccct
tctgaaaaccttaataaataccttctcagtgtaaaagaaaaagttgaagactcttctggc
caccaccgtgcatatggtgtctgttttgttgacacatcagtaggaaaatttaatgtgggc
cagttctcagatgaccgccactgctcgaggtttagaactttggtggcacactacactcct
gtgcagatcctgtttgagaagggaaatctgtctacagacacacacaagatattaaaaggc
tcactctcttcttccatgcaagaaggcttgatctctggctcccagttctggaatgcatct
aaaacattgaaaactctaattgaagaaggatactttgaggataggcagaatgttgataat
aggtttattctgcctcctgtgatcaaatccatgacctcagaaagtgactctctgggtctt
actcctggtgaaaactgtgagttagctttgtcagctcttggtggatgtatcttctacctc
aagaaatgccttattgaccaggagctcttatctctggcaaactttgaagagtatgttcct
gtggacgctgatgttgcaaaagctaaaggatcaagtagtttcttcgctaaaactaatcag
cgaatggtgctggatggggtgacgctagcgaacttggaaatcctgcagaatggaactact
ggcaccacagaaggcacgttattggaaaggattgatgtttgttgtaccccttttggaaag
cgactcctgaaacagtggatatgtgcgcccctctgtaacccccattctatcaatgatcgt
ttggacgcagttgaagatcttctggcagttcctgataaaatgtttgaagttagtgaactt
ctgaagaaacttccagaccttgaaaggctcctaagcaaaattcacagtattggatcacca
cttaaaagtgaaactcatccagacaacagggctatcttttatgaagaaaccagatacagc
aaaaaaaaaatcactgacttcttgtctgcactggaaggatttaaaataatgcttgagacc
atagcgattatggaagaaattgctgctgatttcaaatctaaaatacttaaacagttagtc
accctgaagtctaaaaatccagagggctgtttcccagacttgagtacagaacttaaaaga
tgggatactgcttttgaccataatgaggctcgaaagactggagtcattactccgaaggct
gggtttgaccccgattatgataaagcactaaaggatattatagacattgaagagaatctt
cgggagtatttggataaacaacgcaaacggcttggattcaaagccatgctgtactgggga
gcaggcaaaaatcgctatcaaatggaaatcccagaaaatgcaatatctcacaatttgcct
gaggaatatgaactgaagtccaccagaaagggttataaacgttactggaccaaggagata
gagaagatgctggcagagatggtcaatgccgaagaacggagagatgcagcgctgaaagac
tgtatgaggagactgttccacaattttgataaaaatagcaaagactggcaaacagcagtg
gaatgctttgctgtattagatgtcttgatgtgcctcactaactatagtcaaggtggtgat
ggaccattctgccgacctgtaattctactgccagaacagaatacgccacccttcttggag
cttaaaggttcacgccatccatgcattacaaaaacatttttgggggatgattttattcct
aatgatattgtgataggttccaagaatgaagatgaagacgacaatagtgaagcctactgt
gttttagtaactggcccaaacatgggtggcaaatctacactaatgagacaggctggcctt
ttggcagtaatggctcagttgggatgctatgtacctgctgaagcttgcaggcttactcct
attgacagagtatttacaagactaggtgcctcagacaaaattatgtcaggggagagtacg
ttttttgttgagctgagtgagacttccagcatactccggcatgcaacagagcattccctt
gtgcttgtggatgaactaggtagaggcacagctacttttgatggtacagctatagcaggt
gcagttgttaaagaacttgcagaaaatataaagtgtcgcacacttttttccacacactat
tattcattagtagaagactattcacacagtgctgctgtgcgactgggccatatggcatgt
atggttgaaaatgagagtgaagatccaagccaggaaactattacattcctctataaattc
attagaggagcttgtcctaaaagctatggtttcaatgcagcaaggcttgctaatattcca
gaggaagttattcagaaaggtcacagaaaagcacgggactttgagaaaattacagtttca
ctgagactgttcaggcacctttgcctggtggcagagaatgcagcaggagataaagctgtt
cctaaactgatgactgtaatcaataatctgtaa
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