Chelonoidis abingdonii (Abingdon island giant tortoise): 116819936
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Entry
116819936 CDS
T07367
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116819936 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116819936 (MSH6)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116819936 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
116819936
NCBI-ProteinID:
XP_032627935
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Position
3:complement(191933863..191963073)
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AA seq
1353 aa
AA seq
DB search
MSRQSTLLRFFPKAQAPGVGPTQAPSPAAAPRRRGWASSEAAGDEAALAPGGGAEEMGRS
GGVEAQGARKERTKAARAPSVSCDYSPGDLVWAKMEGYPWWPCLVYNHPTEGTLVRAKGK
SSRVHVQFFDDPPTRGWVSIKYLKPYKGSAVRETQRGGMFYSSKPEIKRAMEMADDAMRK
DKTKRLELAVCNEPSDTEDEEEMEVSESASGNSEDYDSEEEEKKKKLLASRWRSSGKAKK
RRVVDSDSDSEGSDEEFKPDAKDEASSDEASSGMGEGESASSETDTKMDVDSPVKVPSKR
KRETDRKPAKRNSLENDLSETPKRAVPVSLETKSRLTSFAAPENFESQPNVSSSSIWEHD
KLEWLQEGKKRDGCRRRQSDPHYDPCTLHVPEDYLNKCTPGMRKWWQLKSQNFDAVIFYK
VGKFYELYHMDAVTGVNELGLVFMKGIWAHSGFPEIAFGRFSDVLVQKGYKVVRVEQTET
PEMMEARCRSLSHPTKFDRVVRREICRIITKGTQTYSVLDGDPSENLNKYLLSVKEKVED
SSGHHRAYGVCFVDTSVGKFNVGQFSDDRHCSRFRTLVAHYTPVQILFEKGNLSTDTHKI
LKGSLSSSMQEGLISGSQFWNASKTLKTLIEEGYFEDRQNVDNRFILPPVIKSMTSESDS
LGLTPGENCELALSALGGCIFYLKKCLIDQELLSLANFEEYVPVDADVAKAKGSSSFFAK
TNQRMVLDGVTLANLEILQNGTTGTTEGTLLERIDVCCTPFGKRLLKQWICAPLCNPHSI
NDRLDAVEDLLAVPDKMFEVSELLKKLPDLERLLSKIHSIGSPLKSETHPDNRAIFYEET
RYSKKKITDFLSALEGFKIMLETIAIMEEIAADFKSKILKQLVTLKSKNPEGCFPDLSTE
LKRWDTAFDHNEARKTGVITPKAGFDPDYDKALKDIIDIEENLREYLDKQRKRLGFKAML
YWGAGKNRYQMEIPENAISHNLPEEYELKSTRKGYKRYWTKEIEKMLAEMVNAEERRDAA
LKDCMRRLFHNFDKNSKDWQTAVECFAVLDVLMCLTNYSQGGDGPFCRPVILLPEQNTPP
FLELKGSRHPCITKTFLGDDFIPNDIVIGSKNEDEDDNSEAYCVLVTGPNMGGKSTLMRQ
AGLLAVMAQLGCYVPAEACRLTPIDRVFTRLGASDKIMSGESTFFVELSETSSILRHATE
HSLVLVDELGRGTATFDGTAIAGAVVKELAENIKCRTLFSTHYYSLVEDYSHSAAVRLGH
MACMVENESEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEEVIQKGHRKARDFEKI
TVSLRLFRHLCLVAENAAGDKAVPKLMTVINNL
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaaagcactctgctccgcttcttccccaaggcccaggcgccaggcgtcggt
ccgacccaggccccttcccctgcggccgcaccgaggcggaggggctgggcctccagcgag
gcagccggggatgaggcagccctggctcccggcggcggcgcggaggagatgggacgatcc
ggcggagtcgaggcccagggggcgaggaaggagagaaccaaggccgcccgggcccccagc
gtctcctgtgattattcacctggtgatttggtttgggccaagatggaagggtacccctgg
tggccatgtcttgtatacaatcacccaactgaaggaacactagtcagagcgaaaggaaaa
tcctctcgtgtacatgtacaattttttgatgaccccccaacaaggggctgggttagcatt
aaatacttaaagccatataaaggctcagcggttagggaaacacagaggggaggtatgttt
tatagttcaaagcctgaaattaaaagagcaatggaaatggcagatgatgctatgcgcaaa
gataaaactaagcggcttgagcttgcagtgtgcaatgaaccttcagatactgaagatgag
gaagagatggaggttagtgaaagtgcttcaggcaacagtgaagattatgatagtgaggag
gaggagaaaaaaaaaaagctgctggcaagcaggtggagaagtagtgggaaagccaaaaaa
cgaagagtggtggactctgacagtgacagtgaaggttcagatgaagagtttaagccagat
gccaaagatgaagcaagcagtgatgaagcaagcagtggaatgggcgaaggtgaatctgcc
agttccgagacagacacaaagatggatgtagatagtcctgtgaaagtcccttctaaacga
aagagagaaactgaccgcaaacctgctaaaaggaatagcttggaaaatgacctttctgaa
acacccaaaagagcagtacctgtttcattagaaaccaaatcaaggctgacctcttttgca
gcgcctgaaaactttgagtctcagccaaatgttagcagttcttctatatgggaacatgat
aaacttgaatggcttcaggaagggaaaaagagagatggatgtagaagacgacaaagtgat
cctcattatgacccatgtaccctccatgtgccagaggactaccttaacaagtgtacccca
ggaatgcggaaatggtggcagctaaagtctcagaactttgatgctgtaatcttctacaaa
gttgggaagttctatgagttgtatcatatggatgcagtcactggcgtaaatgaactggga
ctggtatttatgaaaggtatttgggctcattcaggttttccagaaattgcatttggcaga
ttctctgatgttctggtacagaagggttacaaagtagttcgggttgagcagacagagact
cctgagatgatggaggcacgctgcagatccctgtcccacccaacaaagtttgatagggtt
gtacgcagagaaatatgcaggataattaccaaagggacacagacctacagtgttctggat
ggagacccttctgaaaaccttaataaataccttctcagtgtaaaagaaaaagttgaagac
tcttctggccaccaccgtgcatatggtgtctgttttgttgacacatcagtaggaaaattt
aatgtgggccagttctcagatgaccgccactgctcgaggtttagaactttggtggcacac
tacactcctgtgcagatcctgtttgagaagggaaatctgtctacagacacacacaagata
ttaaaaggctcactctcttcttccatgcaagaaggcttgatctctggctcccagttctgg
aatgcatctaaaacattgaaaactctaattgaagaaggatactttgaggataggcagaat
gttgataataggtttattctgcctcctgtgatcaaatccatgacctcagaaagtgactct
ctgggtcttactcctggtgaaaactgtgagttagctttgtcagctcttggtggatgtatc
ttctacctcaagaaatgccttattgaccaggagctcttatctctggcaaactttgaagag
tatgttcctgtggacgctgatgttgcaaaagctaaaggatcaagtagtttcttcgctaaa
actaatcagcgaatggtgctggatggggtgacgctagcgaacttggaaatcctgcagaat
ggaactactggcaccacagaaggcacgttattggaaaggattgatgtttgttgtacccct
tttggaaagcgactcctgaaacagtggatatgtgcgcccctctgtaacccccattctatc
aatgatcgtttggacgcagttgaagatcttctggcagttcctgataaaatgtttgaagtt
agtgaacttctgaagaaacttccagaccttgaaaggctcctaagcaaaattcacagtatt
ggatcaccacttaaaagtgaaactcatccagacaacagggctatcttttatgaagaaacc
agatacagcaaaaaaaaaatcactgacttcttgtctgcactggaaggatttaaaataatg
cttgagaccatagcgattatggaagaaattgctgctgatttcaaatctaaaatacttaaa
cagttagtcaccctgaagtctaaaaatccagagggctgtttcccagacttgagtacagaa
cttaaaagatgggatactgcttttgaccataatgaggctcgaaagactggagtcattact
ccgaaggctgggtttgaccccgattatgataaagcactaaaggatattatagacattgaa
gagaatcttcgggagtatttggataaacaacgcaaacggcttggattcaaagccatgctg
tactggggagcaggcaaaaatcgctatcaaatggaaatcccagaaaatgcaatatctcac
aatttgcctgaggaatatgaactgaagtccaccagaaagggttataaacgttactggacc
aaggagatagagaagatgctggcagagatggtcaatgccgaagaacggagagatgcagcg
ctgaaagactgtatgaggagactgttccacaattttgataaaaatagcaaagactggcaa
acagcagtggaatgctttgctgtattagatgtcttgatgtgcctcactaactatagtcaa
ggtggtgatggaccattctgccgacctgtaattctactgccagaacagaatacgccaccc
ttcttggagcttaaaggttcacgccatccatgcattacaaaaacatttttgggggatgat
tttattcctaatgatattgtgataggttccaagaatgaagatgaagacgacaatagtgaa
gcctactgtgttttagtaactggcccaaacatgggtggcaaatctacactaatgagacag
gctggccttttggcagtaatggctcagttgggatgctatgtacctgctgaagcttgcagg
cttactcctattgacagagtatttacaagactaggtgcctcagacaaaattatgtcaggg
gagagtacgttttttgttgagctgagtgagacttccagcatactccggcatgcaacagag
cattcccttgtgcttgtggatgaactaggtagaggcacagctacttttgatggtacagct
atagcaggtgcagttgttaaagaacttgcagaaaatataaagtgtcgcacacttttttcc
acacactattattcattagtagaagactattcacacagtgctgctgtgcgactgggccat
atggcatgtatggttgaaaatgagagtgaagatccaagccaggaaactattacattcctc
tataaattcattagaggagcttgtcctaaaagctatggtttcaatgcagcaaggcttgct
aatattccagaggaagttattcagaaaggtcacagaaaagcacgggactttgagaaaatt
acagtttcactgagactgttcaggcacctttgcctggtggcagagaatgcagcaggagat
aaagctgttcctaaactgatgactgtaatcaataatctgtaa
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