Chelonoidis abingdonii (Abingdon island giant tortoise): 116820045
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Entry
116820045 CDS
T07367
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116820045 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116820045 (DROSHA)
03009 Ribosome biogenesis [BR:
cabi03009
]
116820045 (DROSHA)
03036 Chromosome and associated proteins [BR:
cabi03036
]
116820045 (DROSHA)
Enzymes [BR:
cabi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
116820045 (DROSHA)
Messenger RNA biogenesis [BR:
cabi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
116820045 (DROSHA)
Ribosome biogenesis [BR:
cabi03009
]
Eukaryotic type
90S particles
RNase
116820045 (DROSHA)
Prokaryotic type
rRNA processing factors
116820045 (DROSHA)
Chromosome and associated proteins [BR:
cabi03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
116820045 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
YcaO
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
116820045
NCBI-ProteinID:
XP_032628128
LinkDB
All DBs
Position
2:complement(172356275..172469924)
Genome browser
AA seq
1348 aa
AA seq
DB search
MSFHSGRGCPRGRGGPGVRTSTQTFRSQNLRQLHPQQPSVQYQYDQQIAPPTTYSSPPAT
GYVPPRPDFIPYPSLVPPSPQSPISHCPMRPPFPNHQVRQSFPVPPCFPPAPPPVPNPSN
SPVPGAPSGQNTFPYMMPPPSMPHPPPPPVMPQQVNYQPVYSTGYSQQAFPPPNFNSYQH
NSNSFQSSNSNSSSSSSSHFRHTSQYQVEKTQSERRSPERSKHYDEHRHRDHSHVHGDRH
RPSNHGDRRDRGRSPDRRRQESSRHRSDYDRGRTPPRHRSYERSRERERERHRRRDSRGS
PSSERSYKKDYKRTGSRSPRRERKRPRWGEEERERWSENQSASKEKSYTSIKDKEPEEII
SEKNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSRLRDLYERFEEELGKRQ
AKAKAARPPWEPPKTKLDEDLGKCHVGEDLKPKSSSESDCDSDDNSSCSSSSDSEVFDVI
AEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEPIKPCRPMT
NKAGRLYHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNI
DYTIHFIEEMMPENFCVRGLELFSLYLFRDILELYDWNLIGPSFENNSCCPRFHFMPRFV
RFLPDGGKEVLSMHQILLYLLRCNKPLVPEEEIANMLQWEELEWQKYAEECKGMIVTSPG
MKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN
SPKVKQADKQKLSQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL
THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK
YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY
LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA
LIGAVYLEGSLEEAKHLFGRLLFNDMDLQEVWLNYPLHPLQLQESNTDRQLIETSPVLQK
LTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHF
PDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIA
ALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKT
LQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIER
KYRQELKEMRWEREHQEREPEETEEVRK
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctggacgaggatgcccacggggtcgaggaggacctggagtaagaacg
tcaacacaaaccttcagatctcagaacctgagacagcttcaccctcagcagccttcagtg
cagtaccaatatgaccagcagatagctcctccgactacctactcaagccctccagccaca
ggatatgtgcctcccagacccgattttataccgtatccgtccctggtacccccttcacca
cagagtccaatcagccattgtcccatgaggccaccttttccaaaccatcaagtaaggcag
agttttccagtccctccttgtttccctcctgctcctccaccagtcccaaatcccagtaat
tccccagtaccaggggccccatctggacaaaacacttttccctacatgatgccacctcct
tcaatgcctcatcctccaccaccaccggtgatgccgcagcaagttaattatcaacctgtc
tactctacaggctattcgcagcaggctttcccacctcctaattttaatagttatcaacat
aactcaaactcctttcagagcagcaacagtaatagcagcagtagcagtagcagtcatttc
cggcacacaagccaatatcaggtagaaaagacccaaagtgaacgaaggtctccagagagg
agtaagcactacgatgagcatcggcaccgtgatcatagtcatgtacatggagacagacat
cggcccagtaaccatggagatcggcgggatcggggaaggagccctgacaggagaaggcaa
gaaagcagtcggcacaggtcagattatgacagaggaaggacaccgcctcgccatagaagt
tatgaacgaagcagggaacgggagagggaaagacataggcgtcgtgatagccgaggatcg
ccatcttcagagaggtcctacaaaaaagattacaaaagaaccgggagccgatcccccaga
cgagagaggaagagacctcgatggggggaggaggagagagagaggtggtcagagaatcag
agtgccagtaaagagaagagttatacctctataaaagacaaagagccagaggagatcatt
tcagaaaaaaatgaagaggaagatgaagaattgctcaagcctgtgtgggttcgttgtacc
cattcagaaagctactattcaaatgatcctatggatcaagtgggggactccacggtggtt
ggaacaagtcggctccgagatttgtatgaaaggtttgaggaggagttaggaaagcgacaa
gcaaaagccaaagcagcccggccaccatgggagccaccaaagaccaaactcgatgaggat
ttaggtaaatgccatgttggcgaagacctgaaaccgaagagctccagtgagtctgactgt
gactcggatgacaatagcagctgttctagcagttcagattctgaagtgtttgatgttatt
gcggaaattaagcgtaaaaaagctcaccctgatcgtctgcatgaggagctctggtacaat
gaccccggacagatgaatgatggaccactgtgcaaatgcagtgctaaagccagacgaaca
ggaataagacacagcatttatcctggtgaagagcctattaagccatgtcgccccatgacc
aacaaagctggaagactataccactatcgaattacagtgtcacctcccacaaacttcttg
acagacaggccaacagttatagaatatgatgaccatgaatatatctttgaagggttttct
atgtttgcacatgcccctttgacaaatattcctctgtgtaaagtaatcagatttaacatt
gactatacaattcatttcattgaagagatgatgcctgagaatttttgtgtgagagggctt
gaattattctctttgtatctattcagagatattttggaactctatgactggaatcttata
ggtccttcatttgaaaacaattcttgttgtccaagatttcatttcatgccacggtttgtg
aggtttcttccggatggagggaaagaagtgctgtcaatgcatcagatcctactctacttg
ttacgatgcaacaaacctttagtcccggaggaggagattgccaatatgcttcagtgggaa
gagctggaatggcagaaatatgcagaagaatgcaaaggaatgatcgttaccagtcctggc
atgaaacccagttcagttcgtattgatcaattggaccgtgagcagttcaaccctgatgtg
attacttttcccattattgttcacttcgggatacggcctgctcaactcagttatgctgga
gaccctcagtaccaaaagctatggaagagctatgtgaagctgcgccatctgctggctaac
agtcccaaagtcaaacaggctgataaacagaagttatctcagagagaggaagcgctacag
aaaatcaggcagaaaaacacaatgagacgagaagtgacagtggagttaagcagccaagga
ttctggaaaactggtattcgttctgatgtctgccagcatgcaatgatgctgcctgttctc
acccaccatattcgctaccatcaatgtctgatgcatttggacaagttgataggctatacc
tttcaagatcgatgcttgctacagcttgccatgactcatccaagccatcacctaaacttc
ggaatgaatccagaccacgcaagaaattccttgtccaactgtgggattcgacagcccaag
tatggagaccgaaaagtccaccacatgcacatgaggaaaaagggaataaacaccttgata
aatattatgtcccgccttgggcaagatgatccgactccttccaggattaaccacaatgaa
cgtttagaatttttgggagatgctgtggtggaatttttaactagtgtccatttgtactac
ctgtttccaagcctagaggaaggggggttagctacatatcgcactgccattgttcagaac
cagcatcttgctatgttggccaagaagctggaactggatcggtttatgctttatgctcat
ggacctgacctttgtagggaatcggatctacgtcatgcgatggccaactgttttgaagct
ttaataggagctgtttacttggagggaagcctagaggaagccaaacacttatttggacgt
ttgctctttaatgacatggacctacaggaagtatggcttaattacccactacacccactc
caactgcaagaatccaacactgatcggcaacttatcgagacttccccagttctccagaaa
cttacagagtttgaggaagcaattggagtaatttttactcatgttcggcttctggcacga
gccttcactttgagaactgtgggatttaaccacctgactctaggccacaatcagaggatg
gaattcctgggtgactctataatgcaattggtagccactgaatacttattcatacatttc
cctgatcatcacgaagggcacttaacgttgttgcgaagctcattggtgaacaacaggaca
caggccaaagtagcagaagaactgggtatgcaggaatttgccatcactaatgacaagacc
aagagacccgtggctcttcggactaagactttggctgatctcttggagtcttttattgct
gctctttacattgataaggatttggagtatgttcacactttcatgaacgtgtgctttttt
ccacgattaaaggaattcattttaaatcaggattggaatgaccctaaatcccagcttcag
caatgctgcctgactctcaggacggaaggaaaagagccagacattcctctgtacaagacc
ctgcagacagtgggaccttctcatgccaggacatatacagttgctgtttatttcaaaggg
gaaagaataggatgtggtaaaggcccaagtattcaacaagcagagatgggagctgctatg
gatgcacttgaaaaatataactttccccagatggcccatcagaaacggttcattgaacgg
aaatacagacaagagttgaaagaaatgaggtgggaaagagagcatcaagagagagagcca
gaggagaccgaagaagtcaggaaataa
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integrated database retrieval system
