Chelonoidis abingdonii (Abingdon island giant tortoise): 116820471
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Entry
116820471 CDS
T07367
Symbol
SMG7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116820471 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116820471 (SMG7)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116820471 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
116820471 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
ubiquitin
Ferlin_C
Motif
Other DBs
NCBI-GeneID:
116820471
NCBI-ProteinID:
XP_032628839
Ensembl:
ENSCABG00000003832
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQMHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTQWGVTDFIKAFIKFHGHVYLSKGLEKLSPLRERLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLSWTQLLALFISFLGVLCKCPLQNDFQEESWGAYP
LPAVKVSMDWLKLRPSVFQEPVVDERQYIWPWLISLLNSFQPHEEDLSSTNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRVRQQRLIFTGKWIADNQPRLFQCENEV
GKLLFLTEIPELLLEDPSEAKESLVLQETSIAEPLSTDGSPGLKSVLSTGRNLSNCDTGE
KPMVTFKENIKPREVNREQGRIYPPKDVGRERRDYSKGITATKNDGKKDNKRKNETKKCS
LEKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQANNSQFIPIHHPGAFPPLP
SRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGSFLQPTAHSSAGNQVQGGKQSHIPYS
QQRPSGPGPMNQGPQQTAPPSQQPLTSLPAQATAQSASQLQVQALAQQQQSPTKAVQALR
KSPPHHSGFQQYPQADSSKHLWNPPQVQGPLGKIMPVKQPYYLQAQDPLKLFEQSLQPPV
MQQQPLEKKMKPFPMEPYNHNPSEVKMPEFYWDSSYGMSDNRVVMAQQANMDRRGKRPQG
VFRPEQDTVPRMAFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLP
GRSLFKSLLEKPSELMSQSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLNTSTKTEVTPS
MAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNF
GPIGTPDNRDRRIADRWKTDKPAMGGFGLDYLPATSSSSESSWHQTSTPSGTWAAHGPAM
EDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGPMNPPH
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgtgcccagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggtccagctgaagtctggacatccagacaggctctacaggacttatac
cagaaaatgctagtaactgatctggagtatgctttagacaagaaagtggaacaagacctc
tggaatcatgcttttaagaatcagatcacgacacttcaggggcaggcaaaaaaccgagca
aacccgaatcggagtgaagttcaggcgaacctttctctgttcttagaggcagctagtggt
ttctacacacagttattacaggaactgtgcacagtgtttaatgtagacttgccctgccgt
gtgaagtcctcccagctgggaattatcagcaataaacagatgcacaccagcgccattgtg
aagccgcagtctagctcctgctcgtacatctgccagcactgccttgttcaccttggagac
attgctcgctacaggaatcagaccagccaggcagagtcctactatagacatgcagctcag
cttgttccctccaatggtcagccttacaatcagttggctattttagcttcctccaaagga
gaccacctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctccactaatctacaaaaagcactttctaaagcactggaaagtcgggatgaggtg
aaaactcaatggggtgtgactgacttcatcaaggcgtttattaagttccatggccatgtg
tatctgagtaagggcttggagaagctgagccctcttcgagagaggctggaggaacagttc
aagaggttgttattccaaaaagccttcaactctcagcagttagttcatattactgtcatc
aacctgtttcaactgcatcatctgcgagattttagcaatgaaactgaacagcatagttac
agccaggatgagcagctttcctggacacagctacttgccctcttcatttcctttcttgga
gtcctgtgcaagtgtccactgcagaatgacttccaggaggagtcttggggtgcatacccg
cttcctgctgtaaaggtctcgatggactggctgaaacttagacccagtgtcttccaggag
ccagtagttgatgaaagacagtacatttggccatggctgatttctctgctaaacagcttc
cagccccacgaggaagatctttccagcactaatgctaccccacttccagaggaatttgag
ttgcagggattcttggctctgagaccctcattcaggaacttggatttctccaaaggccac
caggggattacaggagacaaagaagggcagcagcgacgggtacggcagcaacgactgatc
ttcacaggaaaatggattgctgacaaccagccaagactgtttcagtgtgaaaacgaagta
ggaaaactgttgtttttgacagaaatcccagagttgttactagaggatcctagtgaagcc
aaagagagtctcgtcctacaagaaacatccattgcagagccactgtctacagatgggagc
ccaggactcaaatcagttctgtccactggcagaaatcttagcaactgtgacactggggag
aaaccaatggtcacattcaaagagaacattaaaccacgagaggtaaacagagagcagggg
cgaatctatccacctaaagatgtgggtagggaaagaagggactatagcaaaggaataaca
gctactaaaaatgatggaaagaaagacaacaagagaaagaatgaaaccaagaaatgcagc
ttggagaagatgcaggaggcaggaaagcagaatgtggcagtgcaggtaaaatctcagact
gagatgaggaaaactccagtgtccgaagccagaaaaacaccagtaactcagactccaagc
caggcaaacaactcccagttcatccccattcatcacccaggagccttccctcctcttccc
agtcggccagggttcccacctccagcatacgttatacctcctcctgtggctttctctatg
agctcaggttacaccttcccaggtggtgtttctgttccaggaagctttcttcagcctaca
gctcactcctctgcaggaaaccaggtgcaaggtgggaaacagtcccacattccttacagc
cagcagcggccctctggaccagggccaatgaaccagggacctcaacagacagcaccacct
tcccagcaaccccttacatccttaccagctcaggcaacagcacagtctgcaagccaatta
caggtccaagctctggctcagcaacaacagtcccctacaaaagctgtgcaggccctaagg
aagagcccaccacaccactctggattccagcagtatccgcaggcagactcatcaaagcat
ctctggaatcctcctcaagtccaaggcccactgggaaagatcatgcctgtaaagcagccc
tattatcttcaggcccaggatcccctaaaactgtttgaacagtcattacagcctcctgtg
atgcagcagcagcctctggagaaaaaaatgaagcctttccccatggagccatataaccac
aacccctcagaagtcaagatgccagaattttactgggactcctcctatggcatgtctgat
aatagggtagtgatggcacaacaggctaacatggatcgcagggggaaacgaccacaagga
gtcttccgcccagagcaggacactgtgcccaggatggcttttgaggaccccaagagctcc
cctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaagaactg
attttctctaatcctcctgatctttacccagctctgctggggcctctcgcctctcttcct
ggacgaagcctctttaagtccctattagaaaaaccatcagagctgatgtctcagtcatct
tctttcctgtccctcactggcttctccctaaaccaggaaagatatccaaacaacagcatg
ttcaatgaggtatatgggaaaaacctgaataccagcacaaaaacagaggtcactccctca
atggcccatcaggagacatcactatattctctctttgaagggacgccctggtctccatcc
cttccagcaagctcagatcattcaacaccagccagtcagtctcctcactcctccaaccca
agcagtttgccaagctcccctccaactcataaccacaattctgttccattctccaacttt
ggacctattgggacgccagacaacagggacaggaggattgcagaccgttggaaaacagat
aaaccagcaatgggaggatttgggctggactatctcccagcaacatcctcctcctcagag
agcagctggcaccagaccagcactcccagcggcacctgggcggcccatggccccgctatg
gaggattcctccgctgtgctcatggagagcctgaagtccatctggtccagttccatgatg
catcctggaccatcagccctggagcaactgttaatgcagcagaagcagaagcagcaacgt
ggacaaggccccatgaatccaccacactga
DBGET
integrated database retrieval system
