Chelonoidis abingdonii (Abingdon island giant tortoise): 116821358
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Entry
116821358 CDS
T07367
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04137
Mitophagy - animal
cabi04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
116821358 (RABGEF1)
04137 Mitophagy - animal
116821358 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cabi04131
]
116821358 (RABGEF1)
Membrane trafficking [BR:
cabi04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
116821358 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
116821358 (RABGEF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KCTD_C
VPS9
BTB_2
DUF5601
zf-A20
BTB_3
DUF4350_C
ZW10_C
Motif
Other DBs
NCBI-GeneID:
116821358
NCBI-ProteinID:
XP_074915642
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All DBs
Position
20:12101299..12164307
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AA seq
811 aa
AA seq
DB search
MVVVTGQNKASGNLDNAMSSSDAEDDFQDPATPTATQAGHSLPLLPQQFPEVVPLNVGGM
YFATRLSTLRRYEDTMLAAMFSGRHYIPTDAQGRYFIDRDGTYFGDVLNFLRSGDLPPRE
RVRSVYKEAQYYSIGPLLDNLEEVQPLKGEKVRQAFLGLMPYYKEHLERIIEIAKLRAMQ
RKARFAKLKICVFKEEMPITPYECPLFNTLRFERSESETKLFEHHCEVDVSFGPWEAVAD
VYDLLHCIVTDLSDKGITVDHQCIGVCDKHLINHYYCKRPIYEFKITWWLGFPFSLRKNN
STLLVHENLKLKHSRNGKEEMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWR
EEYHKARQKQIQDDWELAERLQREEEEAYASSQSTPGAQSLTFSKFEEKKSNEKTRKVTT
VKKFFSASSRTGAKKEIHEAKAPSPSINRQVSIETDRASKEFIEFLRTCHKSGQEIYKQC
KMFLEAMHHKRELSIEEQSECAQDFYQNVAEKLQTRSKVSPEKVEKTMDQIEKYIMTRLY
KYVFCPETTDDEKKDLVVQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDS
KRVPRDKLACITQCSKHIFSAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITR
FCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPKKQESENWS
SDVCLGVKQMYKNLDLLSQLNERQERIVSEAKKLEKDLIDWTDGITKEVQDIVEKYPLEI
KPKNQPLAAIDSENVENDKLPPPLQPQVYAG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggtggtagtcacagggcagaacaaagccagtggaaatctggacaatgccatgtcgagt
tcagatgcagaggatgacttccaagaccctgccactcctactgcaactcaggcagggcac
tcgctgcctctgctgcctcagcagttcccagaagttgttccgcttaatgtaggaggcatg
tatttcgctaccaggctgtcaacgctaagacgctatgaagataccatgttggctgctatg
tttagtggaagacactacattccaacagatgctcaaggcagatattttattgacagagac
ggaacttactttggagacgttcttaactttctgcgatctggtgacctgccaccgagagaa
cgggtgaggtcagtttacaaggaagctcaatattattccataggaccattgctggacaat
ctagaggaagtccagcctcttaaaggagaaaaagttagacaagctttcctgggcttaatg
ccatattacaaagaacacttggaacggataattgaaatagctaagcttagagccatgcag
agaaaagcaagatttgcaaaattgaagatctgtgttttcaaggaagaaatgcccatcacc
ccatatgagtgtccacttttcaacactctacgttttgaaagaagtgaaagtgagacaaaa
ctgtttgaacatcactgtgaagtagatgtatcttttggcccctgggaggctgtagctgat
gtatacgatcttctgcactgtattgtgacagatctgtcagacaagggaattactgtggat
catcagtgcattggtgtgtgtgataaacatctgataaaccattattactgcaagcgcccc
atctatgaattcaagattacttggtggttaggattccccttcagtctgaggaaaaacaac
agcaccctgctagtgcatgagaatctaaaactgaaacactctagaaatggcaaagaagaa
atgagcctaaagtctgaacgcagaggaattcacgttgatcagtcagagctactatgcaag
aaaggatgtggttactatggaaaccctgcttggcagggtttctgctccaagtgctggaga
gaagagtaccataaggcaaggcagaagcagattcaggatgactgggagctggcagagcga
cttcagcgtgaggaggaagaagcctatgctagtagtcagagtacaccaggggcccagtca
ctcaccttttccaagtttgaggaaaagaaaagcaatgaaaagacgcgcaaggtgacaact
gtgaagaaattcttcagtgcttcttccaggacaggagctaagaaggagattcatgaagct
aaggctcctagcccttcgataaacaggcaggtcagcattgagacagatcgagcgtccaag
gagtttatagagtttcttaggacctgtcataaatctggtcaagaaatttataagcagtgc
aaaatgtttttggaagcaatgcatcacaaaagggaattaagtattgaggaacaatctgaa
tgtgcccaggacttctatcaaaatgtagcagagaaattacagacccgttcgaaagtttcc
ccagaaaaagttgagaaaacaatggaccagatagaaaaatatatcatgactcgattgtat
aaatatgtgttctgccctgaaacaactgatgatgagaagaaggatctggttgtccaaaag
agaatcagggctttgcactgggttactccacaaatgctgtgtgttcctgttaatgaagaa
attccagaagtctctgatatggttgtgaaagcaattacagatattatcgaaatggattca
aaacgtgtccctcgtgataagttagcatgcatcacccaatgcagcaaacatatcttcagt
gctataaaaatcacaaaaaacgaaccagcttctgctgatgacttcttaccaacactcata
tatattgttttgaagggaaatccaccccgtctgcagtccaatattcagtatataacccgc
ttctgtaatccaagcaggttaatgactggagaggatggctactattttaccaatctgtgc
tgtgctgtggccttcattgaaaagctggacgctcaatctttaaatctaagccaggaggat
tttgatcgctacatgtcgggccaaacatctccaaagaaacaagaatctgaaaactggtct
tctgatgtgtgcctaggtgttaaacagatgtataaaaacttagacctcctctctcaactg
aatgaaagacaggaaagaattgtcagtgaagccaagaagcttgagaaagaccttatagat
tggactgacggaattactaaggaagtccaagatattgttgaaaaatatccattggaaata
aaaccaaaaaatcaacccttagcagctattgactccgaaaatgtagagaatgataaattg
cccccaccactgcagcctcaggtttatgctggatga
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