Chelonoidis abingdonii (Abingdon island giant tortoise): 116821805
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Entry
116821805 CDS
T07367
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116821805 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cabi04121
]
116821805 (TRIM54)
Ubiquitin system [BR:
cabi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116821805 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
CagA
UvrD_C
SpoIISA_toxin
Sina_RING
MRP-S23
AAA_13
DUF1664
DUF5799
Zn_ribbon_FGT1_2
Lys-AminoMut_A
FlgN
tRNA-synt_1g
CYP38_PsbQ-like
NAP
Exonuc_VII_L
ApoLp-III
Hydro_N_hd
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
116821805
NCBI-ProteinID:
XP_032631116
LinkDB
All DBs
Position
Unknown
AA seq
366 aa
AA seq
DB search
MNFAVGFKPMLGDSHSMDSLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSSSVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPLHAKA
EQQLMCDEHEDEKINIYCLSCEAPTCSLCKVFGAHKDCEVAPLPSVYKRQKSELSDGVAM
LVAGNDRIQAIVTQMEEICKAIEENSRRQKQHLSQRFDSLYSTLEERKKELVQRISREQE
ERVSHVRSLIRQYGEHLEISAKLVESAIQAMEEPQMASYLQQSKELLQKITDLSKVSMSS
RPEPGYEKMDHFSVNVDSLAEMLRTIEFQTDSLGEDDTDGFAGGDGGDAVADEDRPEALE
EAEGQH
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcggtgggattcaagcccatgctgggggactcgcacagcatggacagcctg
gagaagcagctgatctgccccatctgcctggagatgttcagcaagcccgtggtcatcctg
ccctgccagcacaacctgtgccgtaaatgtgccaacgacatcttccaggcttccaaccca
ctgtggcagtcgcggggctcaagctcggtgtcatcaggggggcggttccggtgcccttcc
tgccgccacgaggtcgtcctggaccggcacggtgtctacgggctgcagcgcaacctgctc
gtggagaacatcatcgacatctacaagcaggagtcgaccaggcccctgcacgccaaggca
gagcagcagctgatgtgcgatgaacacgaggacgaaaagatcaacatctactgcctgagc
tgtgaggcgcccacctgctccctgtgcaaggtgtttggggcccacaaggactgcgaggtg
gccccgctgcccagcgtctacaagcgccagaagagtgaactgagcgatggcgtcgccatg
ctggtggctgggaatgaccgcatccaggccatcgtgacccagatggaggagatctgcaag
gccatcgaggagaacagtcggcggcagaagcagcacctgagccagcgtttcgactccctc
tacagcaccctggaggagcgcaagaaggagctggtgcagcgcatcagccgggagcaggag
gagcgggtcagccacgtgcgctccctcatccgccagtacggggagcacctggagatctcc
gccaagctggtggagtcggccatccaggccatggaggagccccagatggcctcgtacctg
cagcaatccaaggagctgcttcaaaagatcacggacctgtccaaggtgtcgatgagtagc
cgcccggagcccggctacgagaagatggaccacttctctgtcaatgtggacagcctggct
gagatgctgagaaccattgagttccagacagactcgctgggtgaggacgacacggacggg
tttgcaggcggggatggaggagatgctgtagccgacgaggacaggccagaggcactagag
gaggccgaaggtcagcactga
DBGET
integrated database retrieval system
