Chelonoidis abingdonii (Abingdon island giant tortoise): 116822384
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Entry
116822384 CDS
T07367
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116822384 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cabi03021
]
116822384 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116822384 (SUPT5H)
Transcription machinery [BR:
cabi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
116822384 (SUPT5H)
RNA polymerase I system
116822384 (SUPT5H)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
116822384 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
116822384
NCBI-ProteinID:
XP_032632138
Ensembl:
ENSCABG00000008012
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
MSDSEDSNFSEDESERSSEAEEVENEAEEEHASVAGSEKEEAEEEEEEEEEDYDEEEEED
DDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSG
ARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEG
VGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQN
QISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIF
EGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQ
PGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVI
AGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQ
LDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVK
VIDGPHSGREGEIRHLFRGFGFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGG
FAPMSPRISSPMHPSAAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKD
ATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSAYGRTPMYGSQTPMYGSGSRTPM
YGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEEFEYGFDDEPTP
SPQGYGGTPNPQTPGYPDPSSPQVNPPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSP
SPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPH
TPGSGIEQNSSDWVTTDIQVKVRDTYVDSQVVGQTGVIRSVTGGMCSVYLKDSEKVVSIS
SEHLEPVIPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLEEQLKILNLRFLGKLLE
P
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagcgaagacagcaacttctccgaggatgagagtgagcggagcagcgaggcg
gaggaggtagagaacgaggcagaggaggagcatgccagcgtcgcgggcagcgagaaggag
gaggctgaggaggaggaagaggaggaggaagaagactacgatgaggaggaagaggaggac
gatgatgatcggccgccaaagaagcccagacatggagggttcatcttggatgaagccgat
gtggacgatgaatacgaagatgaggaccagtgggaggatggcgcggaggacattctggag
aaagaagaaattgaagcctccaacattgataatgtggttctggacgaggatcgctctggg
gcccggaggctgcagaacctttggagggaccagcgcgaagaggagctgggtgaatattac
atgaagaaatacgccaagtcctctgtgggagaaacggtgtatggcggctctgatgagctt
tcggatgacatcacgcagcagcagttactgcccggtgtcaaggatcccaacctctggact
gtgaagtgtaagatcggagaggaacgtgccacagccatagccctgatgaggaagttcatt
gcctaccagttcacggacacgcccctgcagatcaagtctgtggtggctcccgagcatgtg
aagggctacatctacgtggaagcctacaagcagacccatgtgaagcaggccattgagggt
gtgggcaacctgcgaatgggctactggaaccagcagatggtgcccatcaaggagatgaca
gacgtgctgaaggtggtgaaggaggtgaccaacctgaagcccaagtcctgggtccggctc
aaaagaggcatttacaaggacgacattgctcaggtggattacgttgagccaagccagaac
cagatctctctgaagatgatcccacggatcgattttgaccggatcaaagctcgcatgagc
ctgaaggactggtttgccaagcggaagaagttcaagaggcccccccagcggctgtttgat
gctgaaaagatccggtccttggggggagatgttgcttccgatggtgatttcctcatcttt
gaaggcaatcgttatagtcgcaagggcttcctcttcaagagctttgccatgtcggctgtg
atcacggagggggtgaagcccaccctgtctgaactggagaagtttgaggaccagccggaa
ggcatcgatctggaggtggttaccgaaagcacagggaaggaacgggaacacaacttccag
cctggcgacaacgtggaggtgtgcgagggggagctgatcaacctgcagggcaagatcctg
agcgtggacggcaacaagatcaccatcatgcccaagcacgaggatctcaaggacatgctg
gagttcccggctcaggagctgcgcaagtacttcaagatgggagaccacgtcaaggtgatt
gccgggcgctttgagggcgacacggggctgattgtgcgggtggaggagaacttcgtcatc
ctcttctcggacctcaccatgcacgagctcaaagtgctgcctcgggacctgcagctctgc
tccgagacggcctccggcgtggatgtgggcgggcagcacgagtggggcgagctggtccag
ctggatccccagaccgtcggggttattgtccgcctggagcgggagaccttccaggtcctg
aacatgtacggcaaagtggtgacggtcaggcatcaggctgtgacgcggaagaaagacaat
cgctttgccgtggccttggactcggagcagaacaatatccacgtcaaggacatcgttaaa
gtcatcgatgggccgcactcgggtcgcgagggggagatcagacacctcttccgcggcttt
ggattcctgcactgcaagaagctggtggagaacgggggcatgtttgtgtgcaagactcgc
cacctggtgctggctgggggctcgaagccccgagacgtcaccaacttcaccgtcggaggc
ttcgcccccatgagtcctcggatcagcagccccatgcaccccagcgcggcaggtcagcga
ggtggctttggcgggggcgggatgagccgaggccgtgggcgcagggacaacgacctgatt
gggcagacggtccggatctcccagggaccctacaaaggctacatcggagtggtgaaggat
gccacggagtccacagcccgcgtggaactccattccacctgccagaccatctcagtggat
cgccagcgcctcacgacagtgggttcgaggagacctggtggcatgacctccgcctacggc
cgcactcccatgtacggctcgcagacccccatgtatggctccggctcccgcacccccatg
tacggatcgcagactccgctgcacgatggcagcaggaccccacactatggctcccagacg
ccgctgcacgacgggagccggacacctgcacagagcggggcttgggaccccaacaacccc
aatacaccctccagggcggatgaggagtttgaatatggcttcgatgatgagcccacgccc
tctccgcaaggctacggggggacccccaacccccagactcccggctaccctgacccttcg
tctccgcaggtcaatccgccatacaatccgcagacgccggggaccccagccatgtacaac
accgaccagttttcgccgtacgctgttccgtctcctcagggctcctatcagccaagcccc
agccctcagagttaccaccaggtggcgcctagccccgtaggctaccagaacacccactcg
ccagccagttaccacccgaccccatcgcccatggcgtatcaggccagccccagtccgagc
ccagtgggctacagccccatgacgccaggggctccttctccagggggttacaaccctcac
acccctggctctggcatcgagcagaactccagtgactgggtcaccaccgacatccaggtc
aaagttcgagacacttatgtggacagccaggtggtggggcagacgggagtcatccgcagt
gtgacaggcggaatgtgttcagtctacctgaaggacagcgagaaggtggtcagcatttcg
agtgagcatctggaacccgtcataccaaccaaaaacaacaaggtgaaggtgatcctgggg
gaagaccgggaggcgacgggcgtcctcttgagcatcgacggagaggatggcattgtccgc
atggacttggaggagcagctcaagatcctcaacttgcggttcctgggcaagctgctggag
ccttag
DBGET
integrated database retrieval system
