Chelonoidis abingdonii (Abingdon island giant tortoise): 116822493
Help
Entry
116822493 CDS
T07367
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03420
Nucleotide excision repair
cabi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116822493 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
116822493 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cabi04121
]
116822493 (DDB1)
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116822493 (DDB1)
Ubiquitin system [BR:
cabi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
116822493 (DDB1)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
116822493 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
116822493 (DDB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
116822493
NCBI-ProteinID:
XP_032632306
LinkDB
All DBs
Position
4:complement(31814925..31838005)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSSEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFHPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVSLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHHE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVT
QEPKALVSEWKEPKGKNISVASCNSSQVVVAVGRALYYLEIQPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKEQR
TECNHYNNIMALYLKIKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcccagaagccaacggccgtgaacggctgcgtcacc
gggcacttcacttcctcggaggacctgaacctgctgatagcgaagaacacccgccttgag
atctatgtggtcacggcagaggggctgcggcctgtcaaggaggtgggcatgtatggcaag
atcgcagtcatggagcttttccacccaaagggtgagagtaaggacctgctgttcatcctg
acagccaaatataatgcctgtatccttgagtacaagcaaagtggtgagagcattgatatc
atcacccgagcccatggcaatgtgcaggatcgcattggtcggccctcagaaacgggtata
attggcatcattgacccagagtgtcggatgattggattgcggctctatgatggcctcttc
aaggtcattcctctggacagggacaacaaagagttaaaggcctttaacatccgcctggag
gagctgcaggtcatcgatgtcaagttcctctatggctgccaggctcctaccatctgcttt
gtttaccaggatccccagggccgccatgtcaaaacgtacgaggtatccctgcgagagaag
gaattcaacaagggtccctggaaacaggagaatgtagaagcagaagcgtccatggtaatt
gcagtgcccgagccctttggaggagctatcatcattgggcaagagtccatcacctaccac
aatggcgataaatatctggctatagccccacccatcataaagcaaagtacaatcgtgtgc
cacaaccgtgtggatcccaatgggtcccgttacctcctgggggatatggagggccgtctc
ttcatgctgcttctggagaaggaagagcagatggatggcacggtcagcctgaaggacctg
cgtgtggagctgcttggagagacatccattgcagagtgcctgacctacctagataatggt
gttgtctttgtcggctctcgacttggggactcccagctcgtgaagctcagcgtggacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaacctgggccccatcgtg
gacatgtgtgtggtggatctggagagacagggtcaagggcagctggtcacgtgctctggt
gcctttaaggagggctccctgaggatcatccgaaacgggattgggattcatgaacacgcc
agcatcgacctgccagggattaaaggcctatggcccctgagatcagattcacatcatgaa
accgacaacaccttggtgctgtccttcgtcggccagaccagagttctgatgttaaacggg
gaggaagtggaggaaactgagttgacaggatttgtggatgatcagcaaaccttcttttgt
ggcaatgtggctcatcagcaactgatccagatcacctctgcctccgtgcggctggtcact
caggagcccaaagccctggtgagtgaatggaaagagcccaaggggaagaacatcagcgtg
gcttcctgtaacagcagccaggtggtggtggctgtggggcgagcactctactacctggag
atccagccccaggagctcaggcaaataagctgcactgagatggagcacgaggtggcctgc
ctggatatcaccccactgggggactctaatggcatgtcccctttatgtgccatcggcctc
tggactgacatttcagcccgcatcctaaagctgccctcatttgagctgctgcacaaggag
atgctgggaggagagatcattccccgctccattctgatgaccacctttgagagcagccac
tatctcctctgcgccctgggagatggggctctcttctactttgggctcagcattgagacg
ggtttgctgagtgaccgtaagaaagtgacgctgggcacccagcccactgtcctgagaaca
ttccgttcactctccaccaccaatgtctttgcctgctctgaccgccccactgtgatctac
agcagtaaccacaagctggtcttctccaacgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcggatggctaccctgacagtctggcattagccaacaacagcaccctgaca
atcggcaccatcgacgagatccagaagcttcacatccgcacggttcccctctatgagtca
cccaggaaaatctgctaccaggaggtttctcagtgctttggcgtgctttcaagtcgcatt
gaggtgcaggatgccagtgggggcaccactgcactgagacccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttttccagcagcaccgccccgcacgagaca
tccttcggagaggaggtggaggtgcacaatctactcatcatagaccagcacacctttgaa
gtgctccacgctcaccagttcctgcaaaatgaatacgccctaagcctggtctcctgcaag
ctgggcaaggaccccaacacgtacttcattgtgggcacagccatggtgtatcctgaggag
gctgagccgaaacagggtcgcattgtagtcttccactactcagatgggaaactgcagagt
ctggctgagaaggaagtgaaaggggctgtgtattccatggtggagttcaacggcaagctc
ctagccagcatcaacagcacggtgcgtctgtatgagtggacggcagagaaggaacagcgc
acagagtgtaaccattacaataacatcatggctctctacttgaagatcaaaggggacttc
atcctggttggagatctgatgcgctctgtcctgcttcttgcctacaagcccatggagggt
aactttgaggagattgctcgagacttcaacccaaactggatgagtgccgtggagatctta
gacgatgacaacttcctgggagcagagaatgcttttaacctgtttgtgtgccagaaggac
agcgctgccacgactgacgaggagcgccagcacttgcaggaagtggggctgttccacctg
ggggagtttgtcaacgtgttctgccatggctccctggtcatgcagaacctgggcgagacc
tccacaccgacgcagggctcggtgctcttcggcacggtcaacggaatgatcgggctggtg
acgtcactgtcagaaagctggtacaacctcctgctggatgtgcagaacagactcaataaa
gtcatcaagagtgtgggcaagatcgagcactccttctggagatcatttcacactgagcgc
aagacagagccagccacagggtttattgacggtgacttgatcgaaagcttcctggacatc
agccggcccaaaatgcaggaggtggtagcaaacctacagattgacgatggcagtggcatg
aagagagaggccaccgtggatgacctgataaagatcgtggaggagctgacccggatccat
taa
DBGET
integrated database retrieval system
