Chelonoidis abingdonii (Abingdon island giant tortoise): 116822696
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Entry
116822696 CDS
T07367
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116822696 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116822696 (XAB2)
03041 Spliceosome [BR:
cabi03041
]
116822696 (XAB2)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116822696 (XAB2)
Spliceosome [BR:
cabi03041
]
Complex B
Other components
Prp19-related factors
116822696 (XAB2)
Complex C
116822696 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
116822696
NCBI-ProteinID:
XP_032632644
Ensembl:
ENSCABG00000013624
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MPELEETPVAAGEGKPELFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACMWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRAKEKILFVRSDASRSELAALSRQANPDEIDIEEEEEEGDESEENEPDE
VQLEQQCVPSAVFGGLKTD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgccggcgaggggaagccggagctgttcttc
gaggaggaggatctgcagtatgaggaagaaatcctgcgcaaccccttttctgtcaagtgc
tggatccgctacattgagttcaagcagaatgccccccggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagttgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccctggctatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacacgcaggacctttgaccgggcactc
cgggcgctgcccatcacacagcaccatcgcatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacagctgtgcgagtctaccgcagatacctgaagctgagcccc
gagaatgccgaggagtacattgaatacctgcgctctattgaccggctggatgaggctgcc
ctccgccttgccaccgtggtcaatgacgagaggttcgtctcaaaggaggggaaatccaac
taccagctgtggcatgagctatgtgacctcatctcccagaaccctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctgacccgcttcaccgaccagctgggcaag
ctctggtgctccctggccgactactacatccgcagcgggcactttgagaaggcccgggat
gtgtacgaggaggccatccagacggtgatgacggtgcgggatttcacccaggtgtttgac
agctatgcccagtttgaggagagcatgattgcagccaagatggagaccacctctgagctg
gggcaagaggaggaggatgatgtagacctggagctgcgcctggctcgcttcgagcagctg
atcacacggcgccccctgctgctcaacagtgtgctgctgcgccagaacccccacaatgtc
cacgagtggcacaagcgtgtgaagctctacgagggcaaaccccgagagatcatcaacacc
tacacagaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctccttcgccaagttctacgaggataatgggcagatcgaggatgccaggaccatc
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctggcctgcatgtggtgc
gagtacggggagatggagctgcgccatgagaactatgaccaggccctgcgcatcctccgg
aaagccacggccatcccagccaagaaagccgagtacttcgatgcctcggagcccgtccag
aaccgtgtgtacaagtccctcaaggtctggtccatgctggctgacctggaagagagcctg
ggcaccttcaagtccaccaaggcggtgtacgaccgcatcctggacctgcgcatcgccacg
ccccagatcatcatcaactacgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctatgagaggggcatctctctgttccgctggcccaacgtgtatgacatttgg
aacacctacctgaccaagttcatcgaccgctatggcggcaagaagctggagcgcgcccgc
gacctcttcgagcaggcgctggatggctgcccccagaaatatgccaagaccatttacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtatgag
cgggccacgcgggccgtgcaaccctcagagcagtacgagatgtacaacatctacatcaag
cgggcggcggagatctacggagtcacccacacccgcagcatctatgagaaggccattgag
gtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgccgacatggaatgcaag
ctgggcgagatcgaccgggcccgggccatctactcctactgctcacagatctgtgacccc
cggaccacaggctccttctggcagacgtggaaggattttgagatccggcacgggaatgaa
gacacgatccgggagatgctgcgcatcaaacgcagtgtccaggccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagcaatgccacgggcaccgtgtca
gacctggcgccggggcaaagtggcatggacgacatgaagctgctagagcagcgggcagag
cagctggcagctgaggcagagcgggacaaaccccgggccaaggagaagatcctctttgtc
aggagcgatgcgtcacgcagtgagctggccgcactctccaggcaggcgaaccctgacgag
atcgacattgaggaggaggaggaagagggggatgagagtgaggagaatgagcctgatgag
gtgcagctggagcagcagtgtgtcccctcagctgtgttcggggggctgaagaccgactga
DBGET
integrated database retrieval system
