Chelonoidis abingdonii (Abingdon island giant tortoise): 116822936
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Entry
116822936 CDS
T07367
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116822936 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116822936 (DDX6)
03036 Chromosome and associated proteins [BR:
cabi03036
]
116822936 (DDX6)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116822936 (DDX6)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116822936 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
116822936 (DDX6)
Chromosome and associated proteins [BR:
cabi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116822936 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
116822936
NCBI-ProteinID:
XP_032633047
Ensembl:
ENSCABG00000004080
UniProt:
A0A8C0ILQ7
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQIQQQMNQLKNTNTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHTEPVDD
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ctgagaggccctgtaaaaccaagtgggggcccaggaggtggggggacacagattcagcaa
cagatgaaccagctgaaaaataccaacacaatcaataatggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaagatctgagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtctgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagtattcccattgctttgtctggtagggatatcttggctagagct
aaaaatggaacgggcaagagcggagcctacctcattcccttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgatcgttcccactcgagaactagcattgcaggtc
agtcagatctgtatccaggttagcaaacacatgggaggtgccaaagtgatggcaacaaca
ggaggaaccaatctgcgtgatgacataatgaggcttgatgatacagtgcatgtggtgata
gctacccctgggagaattctggatctcatcaagaaaggagtagcgaaggttgaacacgtc
cagatgatagtactggatgaggcagataaattgctgtctcaggattttgttcaaataatg
gaggacattattcttacgctacctaaaaacaggcagattttgctctactcagccactttc
cctcttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaattgaccttgaagggagttacccagtactatgcctatgtaactgagcggcag
aaagtacactgcctcaatacgctattctccaggctccagattaaccagtcaatcattttc
tgcaactcctcacaacgggttgaactgctagccaagaagatctcccagctgggctattcc
tgcttctatatccatgctaaaatgaggcaggaacatcgtaatcgtgtgttccacgatttc
agaaatggcttatgccggaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgattttccaaagctggcagagacgtatctccat
cgtattggcagatcaggtcgctttggtcacctgggcctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcaattgggaactgaaattaaacccatc
ccaagcaacattgacaagagcctgtatgtggcagaataccacactgaacctgtagatgat
gagaaaccttaa
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