Chelonoidis abingdonii (Abingdon island giant tortoise): 116823043
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Entry
116823043 CDS
T07367
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116823043 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116823043 (CPSF2)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116823043 (CPSF2)
U7-dependent histone pre-mRNA processing factors
116823043 (CPSF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
116823043
NCBI-ProteinID:
XP_032633254
UniProt:
A0A8C0J8L9
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Position
4:123445647..123474109
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AA seq
783 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKYVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSVILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEVDIDSS
DESDVEEDIDQPSVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLSESCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDGEDL
EMQVDMPSSDSSVIAQQKAMKSLFDDDDKEVCEESEIIPTLEPLPPHEVIGHQSVFMNEP
RLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQY
AIV
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgattatcaagttgactacgctctcaggggtgcaggaggaatctgctctctgc
tatctgctgcaggtagacgagtttcgttttttattggactgtggctgggatgagaatttt
tcaatggatatcattgattctctaaggaaatatgtacaccaggttgatgcagtgctactt
tctcaccctgatcctctacatcttggtgctctcccctatgcagttggaaaaatgggttta
aattgtgctatttatgcaaccattcctgtatataaaatgggacaaatgtttatgtatgat
ctgtatcagtctcgccacaatacagaagatttcactctctttacattggatgatgtagat
gcagcttttgataaaatacagcagctcaagttctctcagattgtgaacttgaaagggaaa
ggacatggtctttctattacaccactgccggctggtcacatgataggaggtacaatttgg
aagattgtcaaagatggagaagaagaaattgtttatgctgttgacttcaaccacaagagg
gagatccatttaaatggatgttctctggaaatgctgagcaggccttcgctgcttatcaca
gattcctttaatgctacatacgtacaacccagacggaagcaaagagatgaacaactgtta
accaatgtcttggagacgttgcgaggtgatggaaatgtgttaatagccgtggatacagca
ggcagagttctggaacttgcccaacttcttgatcagatttggagaacaaaagatgcagga
ttaggagtctattctttagcacttctaaataatgtcagctacaatgtagtggagttttct
aaatcacaggttgaatggatgagtgacaaactgatgaggtgttttgaagacaagaggaac
aatccatttcaattccgccatctctcattatgtcatggtctttctgacttggctcgagta
cctagcccaaaagtcgtgcttgccagccagcctgatttggaatgtgggttttcaagagat
ctctttatacagtggtgtcaggattccaaaaactctgtaattttaacttacaggaccaca
cctgggacgctagcacgatttcttatagataacccttctgaaaaagttatagatatagag
ttgaggaaacgtgtcaaacttgaagggaaggaacttgaggagtacctagaaaaggagaaa
ctaaagaaagaagcagctaaaaagttagaacagtccaaagaggtagatattgattccagt
gatgagagtgatgttgaagaggatattgatcagccatcagtgcataaaactaaacatgac
ttgatgatgaaaggtgaaggaagccgaaaaggaagcttcttcaaacaggccaagaagtct
tatccgatgtttccagccccagaagaaagaattaaatgggatgaatatggggagattatc
aagcctgaggatttcctagttccagagcttcaagcaactgaagaagaaaagagtaaatta
gaatctggtctgacaaatggagatgagcctatggaccaagatttatcagatgttcctacc
aaatgtatttcagcgacagaatcaatggaaataaaagccagagttacatacatagactat
gaaggacgctcagatggtgactccattaaaaaaataattaaccagatgaagccacgacag
ttgatcattgtccatggtccacctgaggctagccaggacctttcagaatcttgcagagct
tttggtgggaaagatattaaagtttatatgcctaaactgcatgaaactgtagatgcaacc
agtgagactcacatctatcaggtcaggttaaaagattctctggtcagctcccttcagttc
tgtaaagcaaaagatgcagaactagcttggatagatggtgtcctggacatgcgggtttca
aaagtggacacaggagtcattctggaagaaggagagctgagagaagatggagaagacttg
gaaatgcaagtggatatgccttcttctgactccagtgttattgcacagcaaaaggctatg
aagagtttgtttgatgatgatgataaggaagtatgtgaggagagtgagatcattcctact
ctagaaccactgccaccacatgaggttattggacatcagtctgttttcatgaatgagcca
agactgtctgattttaaacaagttcttctgcgagaaggaattcaagctgaatttgtagga
ggagtacttgtatgcaacaacctagtggctgttcgtaggactgaaacagggcgcattgga
ttggaaggctgtctttgccaggacttctatagaataagagatcttttatacgagcaatat
gccattgtctaa
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