Chelonoidis abingdonii (Abingdon island giant tortoise): 116823706
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Entry
116823706 CDS
T07367
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04510
Focal adhesion
cabi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116823706 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116823706 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116823706 (TNR)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116823706 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
Ig_DSCAM-DSCAML_C
EGF_Teneurin
EGF_Tenascin
Pur_ac_phosph_N
FN3_Tor_3rd
EGF_2
Suc_Porlyase_C
TMF_TATA_bd
EGF
TSC22
Motif
Other DBs
NCBI-GeneID:
116823706
NCBI-ProteinID:
XP_032634359
Ensembl:
ENSCABG00000011472
LinkDB
All DBs
Position
Unknown
AA seq
1356 aa
AA seq
DB search
MGADSENLVLRNMLIGLNLLLLGSILKPFECRLQVTTEQMRRRVVDEEGNFANYSPPIKE
QSMVFNHVYNINIPLDSFCSSALEASSDQEVSSEDDRMTEYTEQTSDSESQVTFTHRINL
PKQACKCFTSAQVMQELQSRIEMLEREVSMLRDQCNSNCCQENAATGQLDYIPHCSGHGN
FSLEACGCICNEGWAGKNCSEPHCPMGCSSRGICVEGQCICDNEYSGDDCSELRCLTDCS
SRGLCMDGECFCEEGYAGEDCSELRCPNDCLGKGRCTNGTCVCQEGYVGEDCGQLRCLNA
CSGRGFCQEGMCACEEGYKGQDCSAVAPPEDLRVAGISDRSIDLEWDGPMAVTEYVISYQ
PVAPGGLQLQQRVPGDWSAVTIKELEPSQTYNISIYAVISDILSVPITTKVTTHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQLPSSVTTFNQTGLKPGEEY
IVNVVALKEQARSPPTSDSISTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDYILLKYGL
VNGEGGKTTFRLQPPLSQYSMQALRPGSQYEVSISGVRGTNESDPAVTTFTTEIDAPKNI
RVGLRTLASLELEWDNSEAEVQNYRVVYSTLAGEQYHEVLVPRNAGLTTRATLTDLVPGT
EYGIGISAVMDSKQSIPATMNARTELDSPRNLVVTASTDTSISLAWTQAKGPIDHYRITF
TPASGMASEVTAPKDKSELTLSDLDPSTEYTISVIAERGRQQSLESTVDAFTGFRPITQL
HFSHVTSSSLNITWSDPSPPADKFILTYNPTDKEETKQVMLDATKRHATLSGLQPSTEYI
VSLVAVHDLVSSEPIVGSITTGIDPPKNLTVGNVTKDSMMIFWAPPITAFDHYRVSYRSA
QGKADSMAVANDVTEYSLSHLQPATKYEISLSSVRGREESERVFSIVYTAMDHPLGLTAT
NVTPTEALLQWNPPLSEVENYVIVLTHYTVAGETILVDGANQEYQLINLMPSTSYMVTMY
ATNGPLTSSTISTNFTTLLDPPTNLTATEVTRRSALLSWQPPMAEIENYIMTYRSTDGSR
KELIVDAEDTWIRLEGLSEITEYTVRLQAAQDAMRSGFTSTSFITGGRVFANPQDCAQHL
MNGDTMSGVYTISVNGDLSQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWMDYRVGFG
NLEDEFWLGLDNIQKITSQGRYELRIDMRDGQEATYAYYDKFSIGDARSLYKLRIGDYNG
TSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WFHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctgacagtgaaaacttagtcctgaggaacatgcttatcggtctcaacttgctc
ctgctgggatcaatcctcaagccctttgagtgccggctacaggtgacaacagagcagatg
aggaggcgggtagtggatgaggaaggcaactttgccaactacagcccacctatcaaggag
caatccatggtcttcaaccatgtatacaacattaacatccccctggacagcttctgctca
tcagcactcgaggcatcatctgaccaggaggtgagttcagaagacgacaggatgacggaa
tatacagaacagacctcagacagcgagagccaggtcaccttcacccacaggataaacctc
cccaagcaggcttgcaagtgcttcacctctgcccaggtcatgcaggagcttcagagcaga
attgagatgctggagagggaggtgtccatgctacgggaccaatgcaactccaattgctgc
caagaaaatgcagctacagggcagctagattacatcccccactgcagcggacacggtaac
tttagcctggaagcctgtggctgcatctgcaatgaagggtgggctggaaaaaactgctca
gagccccactgccccatgggctgttccagccgtggcatctgcgtagaaggccagtgcatc
tgtgacaatgagtacagtggggacgattgttcagagctccgctgcctgacggactgtagc
tcccgaggtctctgcatggacggggagtgcttctgcgaagaaggttatgcaggggaagac
tgcagcgagctgagatgccccaatgactgcttgggaaaggggagatgcaccaatggcacc
tgcgtctgtcaggagggctatgtgggggaagactgcggtcagctgaggtgcctgaatgcc
tgcagtggacgtgggttctgccaggaggggatgtgcgcttgtgaggaaggttacaaggga
caggactgctcagcagttgccccacccgaggatctgcgagtggctgggatcagcgacagg
tccattgacctggaatgggatgggccaatggcagtgacagaatatgtgatctcctaccag
ccagtggcgccagggggccttcagctccagcaacgggtgcccggggactggagcgcagtc
accattaaggagctggagccgagccaaacatataacatcagcatctacgctgtcatcagc
gacatccttagcgtccccatcactaccaaggtgactacccatctctccactccacaaggg
ctgcagttcaagactatcacagagaccaccgtggaggtgcagtgggagcccttctctttc
tcttttgatggctgggagatcagcttcatccccaagaacaatgaaggtggcgtcatcgca
cagcttcctagcagtgtcaccacatttaaccagacaggactgaagcctggggaagaatac
atcgtcaatgtggtagccctcaaggagcaagccaggagccccccaacctccgacagcatc
tccaccttaattgatgggccaacccaaatcctggtgcgagacgtttcagacacggtggcc
ttcgtggagtggaccccgccccgagctaaagtagactacatcctgctgaagtatggcctg
gtgaatggggaaggggggaagaccacgttccgactgcagcctcccctgagccagtactcg
atgcaggctctgaggcccggctcacagtacgaagtctctatctctggggttcgagggacc
aacgagagtgaccctgctgtcaccaccttcacaacagagatcgatgcacccaagaacatc
cgggtgggcttgcgaacactggccagcctggaactggagtgggacaacagtgaggcggag
gtgcagaactacagggtggtgtacagcacgctagcaggcgagcagtaccacgaggtgctg
gtgccacggaacgctggcctgacaacccgggccaccctcacagatctggtgccaggaacc
gaatatggaattgggatatcagccgtcatggatagtaagcagagcatcccagccaccatg
aatgcgaggaccgagctcgacagccctcggaaccttgtggtgacagcctccacggacaca
tctatctccctggcctggacccaggccaagggccccatagaccattaccgcatcaccttc
actccagcctccggaatggcctccgaggtgactgcacccaaggataagtctgagctgaca
ctctcagacctggatcccagtacagaatatactatctcagtcattgccgagagaggccgt
cagcagagcttggagtccacagtggatgcattcacagggttccgaccaattacacagctg
cacttttctcatgtgacttcctccagcctgaacatcacctggagtgacccctcccctccg
gcagacaagtttatcttgacctacaatcccacagataaggaagagaccaagcaggtcatg
ctagatgccaccaagagacacgccaccctgtctggcttgcagccatctacggagtatatc
gtgtcactggtggccgtgcacgatttggtcagctccgagcccatagtgggctccatcaca
acagggatcgatcccccgaagaacctcacagtgggcaacgtaaccaaggactcgatgatg
atcttctgggcccctcctatcacagcttttgaccactacagagtatcctaccgatctgca
caaggaaaagcggacagcatggcagtcgccaacgacgtcactgaatacagcctcagccac
ctgcagccagcgaccaagtacgagatcagcctgagcagcgtgcggggccgggaggagagc
gagcgggtcttcagcatcgtgtatacagccatggaccacccgctgggtctgactgccacc
aatgtcaccccaacagaagccctgctgcagtggaacccacctctttctgaggtcgagaac
tacgtcattgtactaacgcactacacagttgcaggggagaccattctagtggatggggcc
aatcaagaataccagctgatcaacctgatgcccagtaccagctacatggtcaccatgtat
gccaccaatgggcctctcactagcagcaccatcagcaccaactttacaactcttctggat
cccccaactaacttgactgccactgaggtcacccgccggagcgccctcctttcatggcaa
cctccaatggcagagatcgagaactacatcatgacctatagatcgactgatggaagccgg
aaggagctgatagtcgacgctgaggacacctggatccgcctagaagggctttcagagatc
acagaatacaccgtacgcctgcaggcagcccaggatgcgatgaggagtgggtttacctcc
accagcttcatcacaggaggccgcgtgttcgctaatcctcaggactgtgcccagcatttg
atgaatggcgacaccatgagtggagtctacaccatctccgtcaatggggacctcagccag
cgagtgcaggtgtactgcgacatgaccacggatgggggaggatggattgtgttccagaga
cggcagaatgggctgacagatttctttcgaaagtggatggattaccgcgttggctttgga
aacctagaggatgagttttggctggggctggataacattcagaagatcacatcgcaggga
cgctatgagctacgaatagacatgcgagatggccaagaggcaacttacgcctattacgac
aagttctccatcggtgatgccaggagtctgtacaagctccggataggagactacaatggc
acttccggagattcactcacgtatcaccagggacgtccgttctccaccaaggacagagac
aacgatgttgctgttacaaactgtgccatgtcatacaaaggggcctggtggtataagaac
tgccaccggactaacctcaatggcaagtacggcgagtcccggcacagtcaggggattaac
tggttccactggaaaggccacgagttctccataccctttgtggaaatgaagatgcgaccc
tacaaccaccgtaacatctcgggaaggaaacgacggtccctacagctgtga
DBGET
integrated database retrieval system
