KEGG   Chelonoidis abingdonii (Abingdon island giant tortoise): 116823988
Entry
116823988         CDS       T07367                                 
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cabi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116823988 (PRPF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cabi03041]
    116823988 (PRPF4)
Spliceosome [BR:cabi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    116823988 (PRPF4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st PRP4 Beta-prop_EML WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT122_1st Beta-prop_IFT140_1st WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 116823988
NCBI-ProteinID: XP_032634861
Ensembl: ENSCABG00000015820
LinkDB
Position
Unknown
AA seq 552 aa
MRGQVALLRAALSTAQVLAWPPPCVSPRRPAPSGPGSSRRATKNKLSEDSDAPPPKRSHI
FYGSLEEKERERLAKGESGLLGRERVKAAIEAGNINITSGEVFDLEDHISERQAEVLAEF
ERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALEKTKK
DDDKSKKSKEEYQQTWYHEGPNSLKTARLWIANYSLPRATKRLEEARLYKEIPEATRTSQ
KQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLR
GHNTNVGAIVFHPQATVSLDKKDINLASCAADGSVKLWNLESDEPVADIEGHTMRVARVM
WHPSGRFLGTTCYDHSWRLWDLQAQEEILHQEGHSKGVYDIAFHIDGSLAGTGGMDAFGR
VWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRKCVYTIPAHQN
LVTGVKFEPTHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATC
SYDRTFKLWMAE
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgcgtggccaggtggctctgctgcgtgctgccttgtccacagcgcaggtcctcgcgtgg
cccccgccgtgcgtgtcgccccggcggcccgctcccagcgggcccggctcctcccggcgg
gcaacaaaaaacaagctctcagaggacagtgatgctcccccacccaagagatcccatatc
ttctacggcagcttggaggagaaggaaagggaacgtcttgccaaaggagaatcagggctc
ctgggaagagagagagtgaaagctgcgattgaggcaggcaatattaacataaccagcggt
gaggtctttgatcttgaagaccacataagtgagcgtcaggcagaagtgttggctgagttt
gagcgcaggaagcgtgccaggcagatcaacgtttccacagatgactctgaagtcaaggcg
tgcctgcgagcactgggggagcccatcacgctctttggagaggggcctgcagaacggaga
gaaagattgagaaatatcctctcggtggttggcacagacgccttagaaaaaaccaagaaa
gatgatgataaatctaagaaatccaaagaagagtatcagcaaacttggtatcatgaaggg
ccaaacagcctgaaaacagctaggctgtggatcgccaactactcgcttcccagggcaaca
aagcggctggaagaagcccgtctgtacaaagagattccagaagcgaccaggacatcccag
aagcaagaactgcacaaatccctgaggtccttgaataatttctgcagtcagattggggat
gaccgcccgatatcttactgccatttcagtcccaattccaaactcctcgccacagcctgc
tggagtggcctgtgcaagctctggtctgtgcctgactgcaatcttgttcatactttaaga
gggcacaacaccaatgtaggagcaatagtgttccatccccaggctactgtctccctggac
aagaaggacatcaacctggcctcttgtgcagctgatggctctgtcaaactctggaacctt
gaaagtgatgaaccggtggcagatatcgagggccatacaatgagagtggcacgagtgatg
tggcatccctctgggaggttcctgggcaccacttgctatgatcactcctggcgcctctgg
gacctgcaagctcaagaggagattctccatcaggaggggcacagcaagggggtttatgac
atcgccttccacattgatggctctcttgctgggactggtggcatggatgcttttggtcgg
gtgtgggatctgcgtactgggcgctgtatcatgttcctggagggccacctgaaggaaatc
tatgggattaacttctccccaaatggataccacatagcaacgggcagcggggacaacaca
tgcaaagtgtgggacctccgccagaggaagtgtgtctacaccatacctgcccaccagaac
ctggtgaccggagtgaagtttgaacctacgcatggtaacttcctgctcaccggtgcttat
gataacacagccaagatctggactcacccaggctggtcccctctgaaaacgctggctggc
cacgagggaaaagtaatgggactggatatctcctcagatgggcagctaatagcaacatgc
tcatatgacaggaccttcaagttgtggatggcagagtag

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