Chelonoidis abingdonii (Abingdon island giant tortoise): 116824226
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Entry
116824226 CDS
T07367
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cabi03021
]
116824226 (SETX)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116824226 (SETX)
5.6.2.5 RNA 5'-3' helicase
116824226 (SETX)
Transcription machinery [BR:
cabi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116824226 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
AAA_16
nSTAND3
NAT10_TcmA_helicase
TAD2
Motif
Other DBs
NCBI-GeneID:
116824226
NCBI-ProteinID:
XP_032635242
Ensembl:
ENSCABG00000006727
LinkDB
All DBs
Position
Unknown
AA seq
2963 aa
AA seq
DB search
MLLQIPFHTQFWRSAPILTPSRIPPFVENICTLHPHRNWALGAKKFLSVLPLLSSCLPCG
GIDESLSGMSSPVAGVRMSTCRWCTPGGSSTTQFLRTYASRTLSPEDHAAANADLCYCLE
CVVEYHKARDELPSLLQEILWELETSRLIDHFEKSMKTDIEEDDELFIVDDNGETKLSGY
TGPDFENNLRVPLLEILKYPYLLLHARISELCVEALCKMEQVNFSFQVFDKHPGIYLLLV
HPNEVIRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKL
ILLPSHLYDTTNYKNYWLGICMLLTVLEEQAMDSLLLSPDKQNDFMQSILHTMEKQTDDE
STDPFWPALHCFMVILDQLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSE
PESNYEDEMVTCSQIVYNYNTEKPKKDTGWKTAICPDYCPNMYEDMQSLANVLQSDIGQD
MRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLCSEIKGFLSERVQQCDKVSEFFIL
ILVSVIELHRNKKCLHLLWISSQEWVEAVVKCANLPTIAFTRCSEKAPGNCPKVTSAISS
QASNSVQHACVQLIRSLLREGYQLGQQTVCKQFLDKLNLLLRGNLPLGWQLKNQETQELQ
MCLKQVIRSIKDRSSNASIPVENSVICTNLPTIPIKQEKGTASDRCQMNIHHRDSLSPPF
SLASGSDEACQESSSPERRGIGEEMYREMSFNNRKLCVTAECLLTDIKKEPHDRSFEECE
HLDSSGATKIHKNTHENGNHHQVQGNQNKNNSLVKQCFNTSPQVSDFKSHAILERDKTEV
RMPECLSAQFYSSSHEDTHSSIGKDGSGSSNSCSKFKTDPNKITNWKTQVQNADWTTKLL
QLMKQSASNSEVDQQSHSESLYTSKDGSRDQKVNILSEGETSVNFNTSNGSENKQENSMN
STFQIKLLSLKEESNVTKADYSNSFKKEAGLKESESDDEDDNIPLATFKHYLKKKRSLSR
RSSSLPKPLLNKDLNTEIPDQGQSNSGSLCTKTGDFKDKKVSMLCTDETSTYFNIPSSSE
NKGEIPRNAPLISPLLIKHESTDRLLDFSRYFKGEGDSEEKINSEDNAAIACDLVKKKSG
ASPLTDSQIDRDLDKLSLAAYAKGVHFPVDSSEEHLIHLCDFTRKVKGAVRSSTKGQSNK
SSSDTDCPNNEVIVISDSSSDEEKKLAIKKPIKKEVYVCPEKQPLTSGYVSDSANKKEQL
KTHSSPLPCEEHNSQFFEFETEDDVFSVWQDSQINDEEGNRAQEQDSNLTSTSNCTSDIF
ELADRINDWGYDTDYISDDIIEKAEEIVERQIDSLSHKKVSITGTKSEAPFQEPAIRGNA
TVQSENFTHPDAVAKDHAKNTRLMEPRASTSSVSLASKLTIKKSTLSPAKSLAKSKMVRT
ALRSPRKMSLKTVQNKKLPQTSSRNTEPCRSTPAVVPPKKVRQCPEPTSTVVKLGLKKGP
RKAFELSQRSLDSLAELRSYGKAAGAVQTARKQKTKLIAPQNLVIKHNRKMLACQDLQFL
RQIRPTQVGRGKNQIGSSEGRSKKITKKSNPKHPIQQPVASDPVSAAGTSEKQKERIAEQ
ICCPSSKNGKKVRKSFSSEREEVQTPHMDKTVPHGSKESNMKIEENNMAGPALQIESCFS
SSLTGDYKNEPAERDYVVPLVSPSAPHFEGATLKESKPKLNENSDEDDLFLTQSDPVDME
MCSQMENIGDIIMSSEKEPLDTEVDAAESLLQNEPLGIVKCKNKDCTEQVEKTGEYCSKH
SATSASDHLFIKPGLPPPKPEKPSTAKNFSSNTSSRSANLTKDFENISKHSLSSKAKSKV
VKSSVSKTGNPKAVSAENQIFKTPSFSRSLQSQSSSNVLRPQNMQTNSTSRFPNRSASGA
HSGQERSLPSFPQANALVTQQRDHSIFVTEVLKWNYEMFVNFSQFGLPYNLLQSIMVSVP
VKFHGYNDYFNTFFPLMMLNAFETVAQEWIENQKTREKNSYHLHLQNFCADLNRADFTAC
IRESDLAKQLHPKEDDLVFLVVPEKQNTFAEESEVESPLVYHVGFVTRFSRASLRETRQN
EQHIVCHLSVQTRGNLSYYINQPVKCVVVSSLVTTQRRFKGLLLLSRSPLAKPIINPSYA
DFCPRDLNVTSESTTSYVRDYNADQKKAIETAYAMVKEHPRLPRICLIHGPPGTGKSKTI
VGLLYRILTERSGNENRAQNLNAKIKRNRILVCAPSNAAVDELMKKIILEFKEKCQDRRN
PLGNCGDINLVRLGPEKSISIDVLRFSLDSQVSHRMNRGQPGRDQDIHRKKEALDRQLDS
LSRQRAMDRCDKRQKSQKLDEEIARLSKERQQLTSQLRKVGGRPQEVQASIILESHIICC
TLSTSGGFLLESAFRRQGLDPFSCVIVDEAGQSCEVETLIPLTHRCSKLVLVGDPKQLPP
TVISMKAQEYGYDQSMMARLHKHLEEQMQQNVIGKLPVVQLTIQYRMHPDICLFPSNYIY
GRTLKTDRATEENRCSSDWLFQPYLVFDVADGHEKRDNDSFANPQEVKLVMEIMKLIKEK
KNDIGFRHIGIITPYSAQKKMIQQELDREFGRGRAGEVDTVDGFQGRQKDCILVTCVRAN
STQGSIGSSQKEAQNLDRRNKFDLFHLFLASLQRLNVTITRARYSLFILGRLTTLMENKD
WNKLIQDAQRRGAIIKTCDKNYKRDAVKILKLKPALQRPLSYPPPAALSEKATQVQACLG
SDGKNKVTNRQSSSDSRKLSASAGLSAQGNGVVRQPPESQALGSKGVTLPTRVQPAARER
PRDPRLARRTEATGKEQASKNSNPSALSNPDVTLSRGPDASSGPWGQISTVQPPVSKAED
WNKPNQTVRQSDMPFTASHTARHDHDWRVSVSSKEARTVGKEDQEGNEWSKDKDYRTPAS
RRASEQPPENKDLSEAKRRKVSY
NT seq
8892 nt
NT seq
+upstream
nt +downstream
nt
atgcttctccagattccttttcacactcagttttggaggtcagctccaatccttacccct
agtagaattcctccttttgtagaaaacatatgcacactccacccccatagaaattgggcc
ctaggtgccaaaaaattcctctctgttcttccactactctcttcctgtcttccctgcggt
ggaatagatgagtccctctctgggatgtcttcacctgtagctggtgtcagaatgagcaca
tgtcgttggtgtacgcccggtggttcctccaccacccagttcctaagaacttatgcttcg
aggactttgtcccccgaagatcatgcagcagccaatgctgatctctgttactgcctggaa
tgtgtggttgaatatcacaaggcaagggatgaattgcccagcttactgcaggagatctta
tgggagttggaaacctcccgtctcattgaccactttgagaaatccatgaagaccgatatt
gaagaggatgatgaattatttatagtagatgacaacggggaaactaaactatctggttac
acaggcccagactttgagaacaacctgcgtgtacctcttctagaaatactgaaatacccg
tacctgctgctacatgcacgaatcagtgagctctgtgttgaggctctttgtaaaatggaa
caagttaacttctcctttcaggtcttcgacaaacatccaggcatttatctgttgttggta
caccccaatgaagtgattcgtcgatgggccatcctgacagcaagaaatttagggaaagtc
gacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaagtcattgag
ttggggctgtttgatagtcctgatatttatagttcttcaatgattgagaaggggaaactc
attcttctgccatcccatttgtacgataccacaaactacaaaaactactggcttggtatc
tgtatgttgctaacagtgctggaagaacaagctatggattctttgttgctgagtccagat
aaacagaatgatttcatgcagtctatacttcacaccatggagaaacaaacagatgatgaa
agcactgatcccttctggccagcgctgcactgtttcatggtgattttggatcagctcggg
tctaaagtgtggggtcaactcatcgatccagtccaggcctttcaaaccattatcaacaat
gtcagctacaacaatgaaataaaaaatatacggaatagttcaaggaggactaaatctgaa
ccagagtcaaactatgaggatgaaatggttacttgcagccagattgtgtataattacaat
acagaaaagcccaaaaaggatactggatggaagacagccatttgtccagattattgcccc
aacatgtatgaagatatgcagtcattggctaatgtgcttcagtctgatattggccaagat
atgcgtgtccataatagcacatttctgtggtttattccttttgttcaatccctaatggac
ctcaaggacttgggcgtggcttatatagtagaggtcattcaccatctgtgctcagaaatc
aaaggctttcttagtgaaagagtccagcaatgtgacaaagtttctgaatttttcatcctg
atcctggtgtcagttattgaactacacagaaataagaagtgcctgcatttgctgtggatt
agctctcaggaatgggtggaagcagtagtgaaatgtgctaaccttccaaccatagcattt
acgcgctgctctgaaaaagcacctggaaactgtcctaaagttacatcagcaatatcttca
caggcttctaactctgtacagcatgcttgcgtgcagttgatacgcagccttcttcgagaa
ggctaccagttagggcaacaaactgtttgcaagcagtttctagataaactcaatctgctt
ttgcgaggaaacttacctctgggttggcagctgaaaaaccaggaaactcaggaattgcaa
atgtgtttaaagcaggtaataagaagtataaaggacagatcatcaaatgcttccatacct
gtggaaaatagcgtgatctgtacaaatttgcccaccattcctataaagcaagagaaaggg
acagccagtgacaggtgtcagatgaatatacatcacagggatagcctcagtcccccgttt
tctttagcatctgggagtgatgaggcttgtcaagagagttcttcccctgaaagaagaggc
attggggaagagatgtatagggaaatgtcttttaacaatagaaaattatgtgtaacggca
gaatgccttttgacagatattaaaaaagaacctcatgataggtcatttgaggaatgtgaa
catctcgatagctctggagcaacaaaaatacacaagaatacgcatgaaaatggaaaccac
caccaagtgcaggggaaccaaaataagaataactccttagttaaacagtgcttcaacaca
agtcctcaagtctcggatttcaaaagtcatgctatattggaaagagacaaaacagaagtg
aggatgccagagtgtctgagtgctcagttttattccagttctcatgaagacactcacagc
tcaattggaaaagatggaagtggctcctctaattcctgttcaaagtttaagacagatcct
aataaaatcacaaattggaaaacccaggtacagaatgctgattggaccacaaaactacta
cagttaatgaagcaatccgcttcaaattcagaagtagaccaacagtctcactctgaatct
ctctatacaagtaaagatggcagcagagatcagaaagtgaatattttgagtgaaggtgaa
acctcagttaactttaatacttcaaatggttctgaaaataaacaggagaacagcatgaac
agtacttttcaaatcaagctgctctctcttaaggaggaatcaaatgttaccaaggcagat
tattcaaattcctttaaaaaagaggctggcttgaaagaaagtgaaagtgatgatgaagac
gacaatattccacttgctacgtttaaacattatttaaagaaaaagagatccctttcaaga
agatcgagttctttgccaaagcctttactgaataaagaccttaacacagagataccagat
caagggcagtctaattctggcagtttatgcacaaagacaggtgacttcaaagataaaaaa
gtgagcatgctatgtacagatgaaacttcaacatattttaacattccatctagttctgaa
aataaaggggagatacctaggaatgctcctctaatcagtccgctcttgattaagcatgag
tcaactgacagactgttagatttttcaagatattttaaaggagaaggcgattcagaggaa
aaaataaatagtgaagataatgcagcaattgcatgtgatttggtaaaaaagaaatctgga
gctagccccttaacagactctcagattgatagagaccttgataagttatccttagctgct
tatgccaaaggtgtccattttcctgttgattcaagcgaagaacacttaatacatctgtgt
gactttacaaggaaagtaaaaggtgctgttagatcatccacaaagggccaaagtaataag
tcctcttctgatacagattgtcctaacaatgaagtcattgtcatttcagactcctcttct
gatgaggaaaaaaagttggctattaagaaaccaataaaaaaagaggtgtatgtatgtcca
gaaaaacagcctttaacgtctggctatgtttctgatagtgcaaacaaaaaagagcaattg
aagactcatagctccccgttgccatgtgaggaacataattctcagttttttgagtttgaa
actgaagatgatgtcttttcagtctggcaagattctcagataaatgatgaggaagggaat
cgggcacaggaacaagactctaacttgacatcaacaagcaactgtacttcagatattttt
gagttggcagatcgtataaatgactggggttatgatacagattacatcagtgatgatatc
attgaaaaagcagaagagattgttgaaaggcagatagattctctttctcataagaaagtt
agtataactggcacaaaatctgaggcaccttttcaagagcctgctatcaggggaaatgca
actgttcagtctgagaattttactcacccagatgctgttgctaaagaccatgccaaaaac
acacgcttgatggaacccagagcatctacatctagtgtatcgttagcttcaaagttgact
attaaaaaaagcactttaagcccagccaaaagtttagcaaaatccaagatggtaagaact
gcccttagaagtcccagaaaaatgagtcttaaaactgtacaaaacaaaaaacttcctcaa
actagttctagaaatactgagccttgcaggtcaacccctgctgtagttcctccaaagaaa
gttcgccaatgtcctgagccaacttcaactgtggtaaaacttggcctaaaaaagggcccc
cgcaaagcatttgagttatcccagcgatccttagatagtctggctgaattgcgcagctat
ggaaaagctgctggggcagttcagactgcacggaaacaaaagactaaattaattgctcca
cagaatctagttataaaacataacagaaaaatgttagcctgccaagatcttcagttttta
aggcagataagacccacacaagtggggagagggaaaaatcagataggaagttcagagggc
agaagcaaaaaaataactaaaaagtctaatccaaagcatcctatacaacagcctgtggct
tctgacccagtatctgctgcaggaactagtgaaaaacaaaaagagcggatagctgagcag
atatgctgtccctcaagcaagaatggaaaaaaagtgagaaaaagcttctcatctgagaga
gaggaagtccagaccccacacatggataaaacggttccacatggttctaaggaatctaac
atgaaaatagaagaaaacaatatggcaggtcctgcattacagatcgaatcatgtttttct
tcatctttaactggagactacaaaaatgaacctgcagagagagactatgttgtccctctg
gtttccccatctgcacctcactttgagggagcaactttgaaagagagcaagcctaaatta
aatgaaaacagtgatgaagatgatttatttttaactcagtcagatcctgtggatatggaa
atgtgttcacagatggaaaatattggagatattataatgtctagcgaaaaagaaccacta
gacacggaagttgatgctgctgaaagtctcctgcagaatgagcccttaggtattgtgaag
tgtaagaacaaagattgtacagaacaggtggaaaagacaggagagtactgtagtaagcat
tctgccaccagtgcttcagatcatctctttatcaagccaggtttaccacctcctaagcct
gaaaaaccttccactgctaaaaatttcagctcaaatacctcttcacggagtgccaacctc
accaaggattttgaaaatatttcaaagcactcattgtcgtcaaaagccaagtcaaaagta
gtaaaatccagtgtctccaagacagggaatccaaaagctgtatcagcagagaaccagata
ttcaagaccccaagtttcagcaggagtcttcagtcccagagttccagcaatgttctccgg
ccccagaacatgcagacaaacagtacttcacgttttcccaacaggtctgcctcaggggct
cattcagggcaagaaagaagtctcccttcctttccacaagcaaatgctcttgtcactcaa
cagcgtgatcatagtatttttgttacagaggtcctgaaatggaactatgaaatgtttgtc
aacttcagccagtttggacttccatataatcttcttcaatcaattatggtctctgttcct
gtcaaatttcatggatacaatgactattttaatacatttttccccttgatgatgctaaat
gcctttgaaacagttgcacaggaatggatagaaaaccagaaaacaagagagaaaaatagt
tatcatttacacttacaaaatttctgtgctgacttgaatcgagcagattttacagcatgc
attcgggaaagtgatttggcaaaacagcttcatccaaaggaggatgacttggtatttttg
gtggtgcctgaaaaacaaaacacctttgcagaagaaagcgaggtggagagccctctagtg
tatcatgttggttttgtgacccgcttctcccgtgcatcactccgtgaaacgaggcaaaat
gagcagcatattgtctgtcacctttccgtccaaactcgaggcaatttgtcatactacata
aaccagccagtgaaatgtgtagtggtgagctctctagtgactacacaacgaaggttcaaa
ggtctgctactgttgagcaggagtcctctggctaaacccatcataaacccaagttacgct
gacttctgtcccagggatttgaacgtaacttccgagagcactacttcctatgtgagagac
tacaatgcagatcagaagaaggctattgaaactgcttatgctatggtgaaggagcatcca
agacttcccagaatctgcctgatccatgggccacctgggacagggaaatcaaaaactatt
gttggactcctgtaccgtattctgacagagaggtctgggaatgagaatcgagctcaaaac
ttgaatgccaagatcaagcgaaaccgtattctggtttgtgcaccatccaatgctgctgtt
gatgaactcatgaaaaagataatcctggaattcaaagaaaaatgccaagacagaagaaat
cctttgggaaattgtggagatataaacttagtgcgactaggtccagaaaagtcaataagc
attgatgtcctgagattcagcctggacagccaagttagccacagaatgaaccggggacaa
cctggccgtgaccaggatattcacaggaaaaaggaagccttggatcgccagctggacagt
ctctctcggcagcgtgccatggatagatgtgataagaggcagaagagtcaaaagttagat
gaggaaattgcccgactttcaaaggagcggcaacaactcacttctcaactgaggaaggtc
ggagggcgccctcaggaagtgcaggctagcatcattttggagtcccacatcatctgttgc
acattgagcacaagcggaggctttctgctggagtctgcttttcgccggcaaggacttgac
cctttcagctgtgtcattgtggatgaggcgggacaatcatgtgaggttgaaactctaatt
ccactgactcatcgctgtagtaaacttgtccttgttggagatcccaagcagctccctcct
actgtaatatctatgaaagctcaagagtatggctatgatcagtctatgatggctcgcctg
cacaaacacctggaggaacagatgcagcagaatgttatagggaagttgccagttgtgcag
ctgactatacaatataggatgcatcctgacatctgcctcttcccatccaattacatttat
ggaaggactttaaagactgacagagcaacagaagagaacagatgttcctcagattggcta
ttccagccatacctggtctttgatgtagcagatggccacgaaaaacgggataatgactct
tttgctaatcctcaggaagtgaagctggtgatggaaataatgaaattgattaaagaaaaa
aagaatgatattggttttcgtcacataggaataatcaccccttacagtgcacagaaaaag
atgattcaacaagagctggacagagagtttggaaggggcagagcgggggaagtagacaca
gttgatgggttccagggtcgacagaaagactgcattctagtgacgtgtgtaagagcgaac
agcacacaagggtcaattggttcaagtcaaaaggaagctcaaaatcttgacaggagaaat
aagtttgatctcttccatctgtttctggcaagtcttcagcgtctgaatgttacaattacc
cgagcaaggtacagcctcttcatccttggaagactgacaacgttaatggaaaataaagac
tggaataagctgattcaggatgctcagagaagaggcgcgatcatcaagacttgtgacaaa
aactataaaagggatgctgttaaaattctgaagctcaaaccagcattacagcggccactc
tcctatcctcctcctgctgcactctcagagaaagctactcaagtgcaggcctgtttgggc
agtgatgggaagaataaagtcaccaacagacaaagcagcagtgactctagaaaactctct
gccagtgctggcctgtcagcacaaggcaatggagtagtccgacagccccctgagtctcag
gctttgggttccaaaggtgtcactcttcccacacgggtgcagcctgctgctcgagaaaga
ccacgggatccaagactggctaggaggacagaagcgacagggaaggagcaggcctccaag
aacagcaatccatcagccctgagcaatccagatgtgacattgtcccggggacctgatgcc
tcttcaggcccctggggtcagatcagcactgtgcagcctcctgtctccaaggcagaagat
tggaacaagcccaaccaaactgtaagacagtcagacatgcctttcactgcttcccataca
gccaggcatgaccatgactggagagtttctgtctcgtcaaaagaggcaagaactgtcggt
aaagaagaccaggaaggtaatgagtggagcaaagacaaggactatcggacccctgcaagc
agaagagcatcggaacaacccccggaaaacaaagacttgagtgaggccaagaggaggaag
gtctcctattag
DBGET
integrated database retrieval system
