Chelonoidis abingdonii (Abingdon island giant tortoise): 116824405
Help
Entry
116824405 CDS
T07367
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116824405 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116824405 (PARN)
Enzymes [BR:
cabi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116824405 (PARN)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116824405 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
T6PP_C
Motif
Other DBs
NCBI-GeneID:
116824405
NCBI-ProteinID:
XP_032635551
Ensembl:
ENSCABG00000021169
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MEIIRSNFKDNLNKVYEAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCSFKSDHTEAKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGTLSYISPNATKCPVTIPEDQKKF
IERVVEQIEDLIQNEENKSLQLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKKREQQKQAKEQEELSDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLSEFKELVACVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKKIPFNPPEV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKDHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGGVSGVDGGAAA
VNSPLGGQPGNILVSWIDDTSAFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEE
KQAKRKWTEDSWKEMERKRLKTQYTPYIPQSRYYCVNSFTATSTMGKRSMSPIQEETGSD
DIEEREIQDTELDETDCCAESVPEGRKRAKKFKKVKEQDPTGSITSGSTELFDVPDSW
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggagatcatcaggagcaattttaaggataacctaaataaagtgtatgaagccatcgag
gaagcagactttttggctattgatggcgaattttcaggaatcagtgatgggccatctgtt
agcacattaaccaatggctttgacacaccagaagaaaggtatcaaaaacttaaaaagcat
tccatggatttcttgctttttcagtttggcctttgtagttttaaatctgaccacacagaa
gctaaatatataatgaaatcatttaacttctatatttttccaaaacccttcaatagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaaggt
tttgattttaataaagtttttcgtaatggaatcccatatttaaatcaggaagaggaaaga
caattacgggagcagtatgatgaaaaacgttctcaggcaaatggtgcagggaccctatcg
tacatttcccctaatgccacaaagtgtcctgtgactattcctgaggatcagaaaaaattc
attgagagagtggtggagcaaatagaagatttgatacagaatgaagaaaacaagagtttg
cagttggagccgtgcacaggatttcagaggaaactaatttatcagaccttgagctggaag
tatccaaaaggtatccatgttgaaactctggagaccgagaagaaggaaagatacattgtt
attagcaaggtagatgaagaagagcgcaaaaaaagagaacagcagaaacaagcaaaagaa
caggaagaactcagtgatgcagtgggattttccagagtcattcatgccattgctaattct
ggcaaacttgttgttggacacaacatgctactggatgtcatgcacacgatccaccagttt
tactgtcccctacctgaagacctaagtgagtttaaggagttagtggcatgtgtctttccc
agactattggacactaaactgatggcaagtacgcaaccttttaaggaaattattaacaac
acatcccttgcagaactggaaaagcgtttaaaaaagattccattcaaccctcctgaagtt
gaaagtgcagaagggtttccaagttatgacacagcttctgaacaacttcatgaagcaggc
tatgatgcttacataacaggactgtgtttcatctccatggctaactacctaggttcattt
ctcagtcctccgaaagatcatgtatctgctagatcaaaactcattgaacccttttttaac
aagttatttcttatgagggtaatggacataccatatctcaatttggaaggaccagacttg
cagccaaaacgagaccatgttcttcatgttacatttcccaaagagtggaagactagtgat
ctttaccagcttttcagtgcctttggaggagtaagcggagtcgacgggggagccgcggca
gtcaactcgccgctgggaggacagccaggtaacattctggtatcttggattgatgataca
tcagcatttgtgtcacttagccagccagaacaagtacaaatagctgtaaacaccagcagg
tatgctgaaagttataggatccagacctatgcagaatatgttgagaaaaaacatgaagag
aaacaggcaaaaagaaagtggacagaagatagttggaaggagatggagagaaagcggtta
aaaacgcaatacacaccatacattccccagagtcggtactactgtgttaacagttttaca
gctaccagcacaatggggaaaagaagtatgagtcctattcaagaggaaactggctctgat
gatatagaagagagagaaatccaagacacagagcttgatgaaacagattgctgtgcagag
tctgttccagagggaaggaagagagccaaaaagttcaaaaaagtcaaggagcaagatcca
acaggaagcatcacaagtggttccacagaactctttgacgttcctgactcgtggtag
DBGET
integrated database retrieval system
