KEGG   Chelonoidis abingdonii (Abingdon island giant tortoise): 116824442
Entry
116824442         CDS       T07367                                 
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04382  Cornified envelope formation
cabi04510  Focal adhesion
cabi04512  ECM-receptor interaction
cabi04518  Integrin signaling
cabi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cabi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116824442 (COL4A2)
   04518 Integrin signaling
    116824442 (COL4A2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116824442 (COL4A2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116824442 (COL4A2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    116824442 (COL4A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cabi04147]
    116824442 (COL4A2)
   00536 Glycosaminoglycan binding proteins [BR:cabi00536]
    116824442 (COL4A2)
Exosome [BR:cabi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   116824442 (COL4A2)
Glycosaminoglycan binding proteins [BR:cabi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116824442 (COL4A2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 116824442
NCBI-ProteinID: XP_074917600
LinkDB
Position
1:complement(262341512..262583604)
AA seq 1715 aa
MRSSRSLLSRRALWQAVQVVLLLVLTSLLTGRVKAGGKSYTGPCGGRDCSGGCECFPEKG
GRGQPGLLGPQGFPGPPGLMGIPGLEGHKGHKGERGRPGVTGPKGEVGLTGVTGFPGADG
VPGHPGQPGSRGKPGHDGCNGTRGDAGERGSQGPSGQPGSFGIQGPKGQKGEPFVMTPEL
ASKFRGEPGERGLLGFPGPQGAPGVVGLIGPTGNPGKEGPPGPPGLPGAQGNRGLGFYGE
KGKKGERGPPGPPGLPSTWELIVPPDTILVEQYKGEKGIRGEIGEPGTPGSPAYSAEKGE
EGIMGFPGQRGLPGINGIPGAAGEKGFQGFDGMPGSRGPKGMKGEQGERGFQGPPFYTQF
PVARKGVSGDPGLPGVPGPAGDPGDQGDPGLPGLPGLSDDGSEKRGLRGEMGAKGFSGEP
GFPATQPGPPGSDGKPGIPGFPGPPGPPGTPGYPFGLKGRQGDPGEAGSRGFPGFRGQKG
LKGETGDCKCIESEEARRGPAGPPGPPGFPGPTGQPGRKGDVGDQGQHGLPGFSGAKGFP
GAVGFPGPKGEKGDPRYITTEGIKGDPGDPGLPGIKGEDGFPGKDGIDGLPGLPGLPGDG
VRGSPGDPGYPGLQGEKGFLGDIGLPGAGLPGLKGHRGPPGDTGTYGNPGLQGPPGPPGA
PAQLDCNQVTEDQGIKTVWSGAECVRAPKGSPGKPGLPGAVGAKGSKGIPGEPGLDGFQG
LKGSQGDPGREGLPGPRGFTGPRGDEGPPGLPGLPGNPGNAGKPGARGPIGPKGIAGEVL
GAAPGTPGDSGPSGFPGLKGLQGDHGVPGIRGADGTPGFPGPKGLQGPPGPLGLPGLPGR
PGLHGFPGLPGQQGPLGRTGSPGFVGSLGARGDQGDQGFPGPVGMKGLAGDKGELGNKGV
QGTPGVPGLPGIDGMPGFPGLKGAKGSPGIGGFKGMLGQKGKPGLKGLKGEVGSFGNQGF
KGLQGEAGQKGDRGEQGPAGKPPEIMSSMLFEVKGEKGDIGDPGLKGNLGFKGSKGMPGL
PGKPGVPGLPGSNSHIEGEKGDAGIKGVTGVLGYPGAIGPPGIRGFPGTTGIRGEKGIEG
IRGDHGRLGPAGQTGDRGDTINLPGSAGLKGEAGETGSLGVKGTRGYKGERGDPGFIGIE
GLKGTQGFPGLKGQKGFPGLVGPPGSQGDPGIPGFQGEKGSRGWPGLAGQAGLPGFRGIS
GLDGLPGTKGLPGSLGPDAYGTEGFPGIYGDKGEAGEPNTIEGPRGAPGQKGERGNPGER
GPIGDLGPDGIPGFPGVSNISGIPGDVGSPGLDGVPGYPGPRGRPGIAAPTGSKGEDGQI
GVLGEDGQKGTRGDPGPQGRPGISGYPGPKGHKGTQGLMGTPGFVGVFGDTGPIGPKGDR
GPTGFQGLPGSPGPPAVPPKLVTHQGTAGPRGNMGPQGIPGEMGPHGPPGDPGFRGPPGK
PGFQGRGGMSALPGFRGDQGPSGFPGLAGLEGEPGRPGNPGIPGMPGRSVNIGYLLVKHS
QSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCY
YANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPEGW
RSLWIGYSFLMHTGAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWL
TTINQQFQSLPSADTLKAGLIRTHISRCQVCMKNL
NT seq 5148 nt   +upstreamnt  +downstreamnt
atgagaagctcgcggtccctcctctcacgtcgtgccctttggcaggctgtgcaggtcgta
ctgctcttggtgttgacttcactgttaactggcagagtaaaggctggtggaaaatcttac
acaggaccatgtggtggaagagactgtagtggaggatgtgaatgttttcctgaaaaagga
ggccgtggtcaaccaggactacttggacctcagggatttcctggaccaccaggattaatg
ggtatcccaggtttagaaggtcacaaaggtcacaaaggtgaaagagggcgacctggagta
actggaccaaaaggagaagtggggctaacaggagtaactggtttccctggtgcagatggt
gttcctggtcatcctgggcagccaggatcaagggggaaaccaggtcatgatggctgcaat
gggaccagaggtgacgctggtgaacgaggaagtcaggggcccagcggtcaacctggttct
tttggaatccaaggaccaaaaggtcagaagggggaaccttttgtaatgactcctgagcta
gcaagcaaattcaggggagagcctggtgagcggggattgttgggctttccaggacctcaa
ggtgctcctggtgttgtgggtttaattggtccaacaggaaatccaggaaaggaaggacca
ccagggccaccgggtttgccaggagcacaaggcaacaggggcctgggtttttatggagaa
aaaggtaaaaagggtgaaagaggtccaccgggccctcctgggcttccatctacgtgggaa
ctgatagttcccccagacacgatcctagtagaacaatacaagggtgaaaagggaataaga
ggagaaataggagaacctggaactccaggctcacccgcatattcagcagaaaaaggagaa
gaaggaataatgggttttccaggacaaaggggattacctggtatcaatggcatcccagga
gctgccggggaaaaaggtttccaaggatttgatggcatgccaggcagccgtggtcctaaa
ggaatgaagggagaacagggtgagagagggtttcaaggaccacctttttatactcagttt
cctgttgcaagaaaaggtgtatcaggtgatccaggattgccaggtgttcctggacctgca
ggagacccaggggaccaaggagatcccggccttcctggtcttcctggattgtcagatgat
ggctctgaaaaaagaggtttacgtggagaaatgggtgccaaaggttttagtggagaacca
ggttttccagcaactcagccaggcccaccaggtagtgatggtaaaccaggaattccagga
ttccctggcccacctggtcctccaggaactccaggctatccttttggactgaagggacgc
cagggggatccaggtgaggcgggcagccgaggtttcccagggttccgaggacaaaaagga
ttgaaaggtgaaacaggggactgtaaatgtattgaaagtgaggaagccagacggggtcct
gctggtccacccggtccaccaggttttccaggcccaactggacagcctggacggaaagga
gatgttggagatcaaggtcagcatggtcttccaggcttctctggtgcaaaaggatttcct
ggtgcagtcggatttcctgggccaaaaggggagaagggagaccctagatatattacaaca
gaaggtatcaaaggagacccaggagatcctggactacctggcattaaaggtgaagatggg
tttccaggaaaagatggcatagatggcttaccagggcttcctggccttccaggtgatggt
gtaagaggttcaccaggtgaccctggttatccaggactacaaggtgaaaagggctttctg
ggagatattggtctgccaggtgcaggcttacctggcctgaaaggacaccgtggccctcca
ggtgacactggaacatacggaaatccagggcttcaaggtcccccaggtcctccaggtgct
cctgcccaattagattgtaaccaagttactgaagatcaaggcatcaagacggtttggtca
ggggcagaatgcgtgagagcaccaaaaggatccccaggaaagccaggattgccaggagct
gtaggtgcaaaaggttctaaagggattccaggtgaaccaggtctggatggattccaaggg
ctaaaaggttcacaaggtgatccaggtcgtgaaggattaccaggtcctcgaggttttact
ggaccacggggagatgaaggcccaccaggtctaccagggctaccggggaatccaggcaat
gcaggaaaaccaggtgcccgagggcctataggaccaaaaggaattgcaggtgaagtttta
ggagcagcaccaggcaccccaggggattctggaccatctggatttccaggattgaaaggc
ctacaaggagatcacggagtaccaggaattagaggagctgatggtactccaggttttcca
ggacccaaaggactgcaaggacccccaggtcctcttggtttgcctggcctgccaggacga
ccaggattgcatggattcccagggcttccaggacagcaaggacctcttggcagaactggc
tcaccaggatttgttggttcacttggtgccagaggagaccaaggtgaccaaggttttcct
ggtccagtgggcatgaaaggtctggccggtgacaaaggtgaactcggtaacaaaggagta
caaggaacacctggggtgcccggtctcccgggaatagacggaatgcctggctttccaggg
ttaaaaggtgctaaaggttcacctggtattggaggtttcaaaggtatgttaggccagaaa
ggaaaaccagggctgaaaggactcaaaggcgaagtcggctcttttggcaaccaaggtttt
aaaggtctacagggggaagcaggccagaaaggtgaccgtggggaacaaggtccagcagga
aaaccaccagagatcatgtcaagcatgctgtttgaggttaaaggtgagaaaggagatata
ggagaccctggcctaaaaggaaatttaggctttaaaggtagtaagggaatgccaggctta
cctggcaaaccaggagttccaggtttgcctggatcaaatagtcacattgaaggtgaaaaa
ggagacgctggtattaaaggagtgacaggtgttctggggtatcctggtgcaattggacct
cctggcatacgaggtttccctggaaccactggaatcaggggtgaaaagggtattgaagga
atcagaggtgatcatggtagacttggccctgctggacaaactggtgatcgaggagatact
ataaacttaccagggagcgcaggtctgaaaggagaagctggtgaaactggatcattgggt
gtgaaaggaaccagaggatataaaggtgaaagaggtgatcctggttttattggcattgaa
ggcctaaaaggcacccaaggttttcctggtttaaaagggcaaaaaggcttcccagggctg
gttggaccaccaggatcacagggagacccaggtattcctggatttcaaggtgaaaaagga
agtcgcggatggcctggtttagcaggacaagcaggtttacccggcttccgaggaatcagt
ggattggatggtttgccaggaactaagggcttgccaggctccctaggtccagatgcatat
gggactgaaggtttcccaggtatttatggtgacaaaggggaagcaggtgaaccgaacact
attgaaggccccagaggagcgccaggtcagaaaggagagagaggcaatccaggggaacga
ggcccaattggtgacctagggcctgatggaattccaggctttcctggagtttcaaacata
tcaggaatacctggtgatgtgggttctccaggtctagatggagtgccaggctatccagga
ccccggggcagacctggaattgcagctccaacgggaagcaaaggagaagatggtcaaata
ggtgtgcttggagaagatggtcaaaaaggcactagaggtgaccctggaccacaagggaga
cctggaatttcagggtaccctggaccaaaagggcataaaggcacgcaaggtctcatgggt
actcctggcttcgtgggagtttttggtgacacagggcccattggacccaagggggacaga
ggacctactggtttccaaggacttccaggttctcctgggccacctgcagtgccgcctaag
ctggtcactcaccagggtacagcaggccctcgtggaaatatgggtccccaaggaatacct
ggtgagatggggccccatggtccaccaggtgatccaggttttagaggcccaccaggtaaa
ccagggttccaaggaagaggtggcatgtcagctcttccaggttttagaggagatcaagga
ccatcaggttttccaggtcttgcaggcttggagggtgaaccaggccgtccaggtaaccct
gggataccaggtatgccaggtcgcagtgttaacattgggtaccttctggtgaagcatagc
caatctgagcaagagccaatgtgcccagttggtatgaacaaactctggagtggctacagt
ctactgtattttgaaggacaggaaaaagcacataaccaggaccttgggctggctggatcc
tgtttggctcgttttagtaccatgcctttcctctactgtaaccctggggacgtctgttat
tatgcaaaccgaaatgataaatcctactggctctcaaccacagcacctcttccaatgatg
cctgtggcagaagaagaaattagaccatatatcagtcgttgttccgtctgtgaagcccca
gctgttgcaattgctgtccatagtcaagatgtttctattccacactgtcccgaagggtgg
cgcagtttatggattggatattccttcctcatgcacactggagctggtgatgaaggcgga
ggacagtcactggtttctcctgggagctgtctggaagacttcagagctactcctttcatt
gaatgcaatggtgcccgaggaacctgccactactatgcaaacaagtatagcttctggctt
accactattaaccagcaattccagagcttgccctcagcagatacactcaaggcaggtctc
atccgaactcatatcagcagatgtcaagtctgcatgaagaatttgtaa

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