KEGG   Chelonoidis abingdonii (Abingdon island giant tortoise): 116824443
Entry
116824443         CDS       T07367                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04382  Cornified envelope formation
cabi04510  Focal adhesion
cabi04512  ECM-receptor interaction
cabi04518  Integrin signaling
cabi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cabi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116824443 (COL4A1)
   04518 Integrin signaling
    116824443 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116824443 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116824443 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    116824443 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cabi04147]
    116824443 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:cabi00536]
    116824443 (COL4A1)
Exosome [BR:cabi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   116824443 (COL4A1)
Glycosaminoglycan binding proteins [BR:cabi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116824443 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 116824443
NCBI-ProteinID: XP_074917582
LinkDB
Position
1:262583787..262839522
AA seq 1673 aa
MRLWRGVALVLAALLLSEEPSEVSAAACSGCGKCDCSGVKGQKGERGLPGLQGLIGFPGM
QGPEGPPGPPGIKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGC
NGTKGEIGPVGPPGLPGLAGLIGPPGSPGIKGDPGEVIGFLPSNVLKGEKGYPGHPGLPG
IPGLPGLQGPIGPPGITGVPGPPGPPGPKGEKGQMGLSFQGPKGDKGEQGVEGVPGAQGP
ASQDREKGYIIYGKKGEPGEKGDKGISGFPGSDIKGEKGEPGKSGPRGKPGKDGEQGPKG
QPGEDGGFGVPGLPGDPGPKGDKGTQGLPGLPGRVIGTGTLDAYGEKGDIGPTGFPGLKG
EQGQKGLPGIPGHPGPPGLPSPGITGPPGFPGERGEKGNQGPPGRSLHGSTGKDGLPGPP
GLPGPPGPPGITNGIRECQPGEPGDRGLPGPQGQPGFLGERGDKGDKGDGCAFCDVSGLP
GHPGPQGPPGLSGFPGQPGAKGDRGVPGLKGLEGVPGSPGAPGLIGSPGAKGEPGDIYFD
SNLKGDKGDPGFPGQPGAPGREGRPGRDGLPGLQGPKGASGTVGLKGERGPPGSSGFPGV
RGERGQPGLPGVGPAGSAGDKGEKGFPGNPGVPGRPGPKGEAGQVIPLPGPPGSDGLPGP
PGFSGVQGDRGDPGFPGKPGLPGEKGAVGQPGIGFSGPPGPKGFPGQPGTSGQPGPPGRP
GFDGLPGTPGLPGQKGDPGVSLPGPKGLPGPQGPAGFPGEKGNAGLPGLRGEQGFPGVPG
QPGIKGDPGSAGSPGSQGAPGVPGIGPPGPPGPPGGPGPQGPKGFPGTKGERGYPGIPGL
DMPGPKGDKGSPGQSGLPGLVGLPGVPGPQGKDGLTGFPGIKGEMGVIGTPGIPGAPGPL
GNPGLQGEKGTPGFPGTSGPRGDTGLKGSKGEVGLPGEPGSIKKIDMENMKGQKGDPGEK
GQEGPIGEKGKIGDYGVPGMPGKDGEPGFPGLPGRKGDQGPPGYPGDPGFPGQKGSIGEM
GLPGIPGEKGVPGVPGSPGVPGYPGLQGAKGDKGESGIPGVGIPGSPGEKGEEGRPGAPG
FPGEKGEKGSTGIPGMPGHPGPKGLPGIAGYPGNPGSQGEKGEKGLSGLDGIPGLKGEAG
QSGSQGPPGVPGQKGEQGYDGIPGSPGAKGDPGIPGRGLPGFPGAKGDKGTKGDVGFPGS
PGSPGIPGSKGEPGFVGLQGPPGQQGTPGLPGRSMEGPKGDRGLPGQPGLSGLPGPMGPP
GSPGLEGAKGEKGNTGWPGAPGRLGIKGDPGFQGIPGSAGLPGSIGQKGDMGPPGVPGFQ
GPKGSSGFPGLKGEQGDQGFPGSKGLQGPPGPPGPYQLLKGEPGLPGPVGPAGLKGFPGL
PGPKGQQGVTGPEGIPGQPGIPGFDGQPGQKGEPGPSGPPGPRGARGPPGPEGLPGSMGP
PGTPSVAHGFLVTRHSQTIEEPECPSGTKLMYYGYSLLYVQGNERAHGQDLGTAGSCLRK
FSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAM
VIAVHSQTVQIPSCPEGWMSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIEC
HGRGTCNYYANAYSFWLATVERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq 5022 nt   +upstreamnt  +downstreamnt
atgaggctgtggcgaggcgtggcgctggtgctggctgcgctcctgctgagcgaggagccc
agcgaggtgtccgccgcggcttgttctggctgtggaaaatgtgactgcagtggagtaaaa
gggcaaaaaggtgaaagaggtttgcctgggctacaaggtttaattgggtttcctggaatg
caaggacctgaaggtccccctgggccaccaggaattaagggtgatactggagaaccaggg
ctcccaggaacaaaaggaacgaggggcccaccaggtgcatcaggatatccaggaaaccca
ggtcttcctggcatccctggacaagatggcccaccaggtccacctggtatcccaggttgc
aatggcacaaagggtgaaataggtcctgttggtcctccaggtttacctggattggctggg
ttaataggacctccaggatctcctggaattaagggagacccaggtgaagtgattgggttc
ttaccatcaaatgtgctaaaaggtgaaaaaggttatcctggccaccctggactaccaggt
ataccaggattgccagggctccagggccccatcgggccaccagggattacaggagttccg
ggtcccccaggcccaccgggacctaagggtgagaagggtcagatgggcttgagttttcaa
ggaccaaaaggtgataagggtgaacaaggtgtggagggcgttccaggtgcacaagggcct
gcctcacaagacagagagaaagggtacatcatatatggaaagaagggtgaaccaggtgaa
aaaggtgataaagggatttcaggatttccaggctcagatatcaaaggggaaaaaggtgaa
cctgggaaatctggcccacgaggaaaacctggaaaagacggcgagcaaggaccaaaagga
caacctggggaggatggtgggtttggagttccaggactaccaggtgaccctggtcctaag
ggagacaagggcacacaaggtcttccaggacttccaggaagagtaataggtactggaaca
ctggatgcttatggtgaaaaaggagatattggtcctacaggttttccaggattaaaaggt
gaacaaggtcaaaaaggtttaccaggtataccaggacacccaggtcctccaggtttacct
agcccagggatcacaggtccacctggcttccctggtgagagaggtgaaaagggtaaccaa
ggtcctccaggacgctctctgcatggatcaactggaaaggatggtttgccagggcctcca
ggtttgccagggcctccaggacctccaggcataacaaatggaatcagagaatgtcagcct
ggagaacctggtgatcgaggtcttcctggacctcaaggacaacctggattcttaggagag
agaggagataaaggtgataaaggtgatggttgtgccttttgtgatgtgtctgggcttcct
ggacatccagggccacaagggccaccgggtctatcaggctttccaggacagccaggagcc
aaaggagataggggtgtgcctggactcaaaggtcttgaaggggttcctggttctccaggt
gcgccaggactgattggtagcccaggagcaaagggagagcccggagacatttactttgat
tctaatctaaaaggtgataaaggagatcctggattcccagggcaaccaggtgctcctgga
agagaaggaaggccagggagagatggtctgccaggtctccagggccctaaaggggcatcg
ggtacagttgggctgaaaggagaacgtggtccccctggctcaagtggatttcctggggta
cgtggtgaaagaggccagcctggtcttccaggggttggacctgctgggtcagctggtgac
aaaggagaaaaaggctttccaggaaacccaggtgtaccaggccgtccagggccaaagggt
gaagcaggacaagtcattcctctgcctggtcccccagggtcagatggtctcccagggcca
cctggcttctctggagtccaaggtgacaggggtgatcctgggtttccaggaaaacctgga
cttccaggagaaaaaggtgctgttgggcagccaggaataggattctctgggcctcctggc
cctaaaggtttcccaggtcagcctggcacatcaggtcagccagggcctccagggcgtcct
ggctttgatggtttaccaggcacaccaggtttacctggtcaaaaaggtgaccctggagtg
agtctcccgggtcctaaaggattaccaggcccacagggcccagctggcttccctggagaa
aaaggaaatgctggtttgcctggcttacgaggagagcaaggatttccaggtgtacctggt
cagccaggaatcaaaggtgacccaggttcagctggatcaccaggttcacaaggtgcccca
ggtgtgccaggaataggccctccagggcctcccggacctccaggaggaccagggccacaa
ggaccaaaaggatttcctggaacaaagggagagaggggctacccaggtatcccaggacta
gatatgccaggaccaaaaggagataagggtagccctggccagagtgggctaccaggtctg
gtaggtttacctggcgtacctggtccacaaggaaaagatggacttacaggctttccaggc
atcaaaggagaaatgggagttatcggaacccctggaatcccaggtgctcctgggccatta
ggaaatccaggattacagggtgaaaaaggtactccaggttttccgggtacgtcagggcca
cgaggtgatactggtttaaaagggagtaaaggtgaagtaggtctaccaggagaaccagga
agcataaagaaaatagacatggaaaatatgaaaggccaaaagggagacccaggagaaaaa
ggacaagaaggaccaataggagaaaagggaaaaataggggattatggtgtaccaggaatg
ccaggaaaggatggtgaacctggcttcccaggacttccaggacgaaaaggtgatcaaggc
cctccaggatacccaggtgacccaggatttccaggacaaaaaggatcaattggagaaatg
ggtttgccaggaatacctggagaaaaaggtgtaccaggtgtgccaggctcaccaggtgta
ccagggtaccctggattacaaggtgcaaaaggagacaaaggagagtcgggtattccaggg
gttggcattccaggttctccgggtgagaagggagaagaaggaaggccaggtgctccaggc
ttccctggtgaaaaaggtgaaaagggtagcacaggaattccaggaatgcctggtcatcca
ggtcccaaaggattacctggtattgcaggatatccaggcaacccaggtagccagggagaa
aagggtgaaaaaggactctctggtttagatggcattccaggtttaaaaggagaagcaggt
cagtctggttctcaaggtccccctggtgtccctggacagaaaggtgaacaaggttatgat
ggaataccaggttcgcctggagcaaagggtgacccaggtattccaggtagagggcttcca
ggatttcctggtgcaaaaggagataaaggtacaaaaggcgatgtgggttttccaggatcc
ccaggaagcccggggattcctggctcaaaaggagaaccaggatttgttggtctacaaggt
cctccaggccaacagggcactcccggactaccagggagatcaatggaaggtcctaaagga
gacagaggactcccaggtcaacctggactttcaggtctaccaggtccaatgggaccacca
ggatctccgggcctggaaggagccaaaggagaaaaaggaaacacgggttggcctggagca
cctggaagacttggaatcaaaggtgatccgggattccaaggcatccctggtagtgctggt
ttaccgggaagtattggtcaaaagggtgatatgggacctccaggagttcccgggtttcaa
ggtccaaaaggatcttctggcttcccaggtctcaaaggagaacaaggtgaccaagggttt
cctggctctaaaggtttacaaggtccaccaggtcctccaggtccatatcagcttcttaaa
ggggaaccaggtttacctggccctgtcggaccagctggactaaaagggttccctggactt
ccaggtccaaaaggacaacaaggagtgacaggacctgagggtatacctgggcaacctggc
attccaggatttgatggtcaacctggtcagaaaggagaacctggtccttctggtcctcca
ggtccgcgaggagccagaggtccaccaggcccggagggtttaccagggtctatgggccca
ccaggcacaccatctgtcgctcatggcttccttgtaaccagacacagccaaaccattgaa
gaaccagaatgtccatctggaactaaactgatgtactatggctactccttactttacgta
caaggcaatgaaagggcacatggtcaggatttgggcacagcagggagctgtctccgtaaa
tttagcactatgccattcttgttctgcaacatcaataatgtatgcaactttgcatcaagg
aatgactattcctactggctgtctactcctgaacccatgccaatgagtatggcgcctatc
actggtgacaatatcaggccattcatcagtagatgctctgtgtgtgaggctcctgccatg
gtaattgcagttcacagccaaacagttcaaataccatcatgccctgaaggctggatgtcg
ctttggattggttactcctttgtaatgcataccagcgctggtgctgagggttccgggcaa
gctctggcatctccaggttcctgtctagaggagttccgcagtgctcccttcatagaatgc
catggtcgtggaacttgtaactattatgcaaatgcttacagtttttggcttgccactgta
gagagaaatgagatgttcaagaaacctactccttcaactctgaaagcaggggacttgcgc
tcaaacgttagccgttgtcaagtctgtatgagaagaacataa

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