Chelonoidis abingdonii (Abingdon island giant tortoise): 116824826
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Entry
116824826 CDS
T07367
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116824826 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cabi03021
]
116824826 (SMARCA4)
03036 Chromosome and associated proteins [BR:
cabi03036
]
116824826 (SMARCA4)
Transcription machinery [BR:
cabi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116824826 (SMARCA4)
Chromosome and associated proteins [BR:
cabi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116824826 (SMARCA4)
Chromatin remodeling factors
BAF complex
116824826 (SMARCA4)
PBAF complex
116824826 (SMARCA4)
GBAF(ncBAF) complex
116824826 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
116824826
NCBI-ProteinID:
XP_032636284
Ensembl:
ENSCABG00000004334
LinkDB
All DBs
Position
Unknown
AA seq
1646 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHTIPPQG
SGGYAQDNMHQMHKPMDSMHEKGISDDPRYGQMKGMGMRPGGHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPANGPSSGSQMSSGPGGVPLDGTDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHVQMAVQGKRPMPGMQQQMPTLPPPSVSGTGPVQGAGPGPGP
GPTPPNYNRPHGIGGPNMPPPGPSGVPPGMPGQPPGAPPKPWPEGPMANAAAPTSTPQKL
IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVQLHQKQNRITPIQKPRGLD
PVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVV
CMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQH
AKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLI
DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD
GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLDTWLEMNPGYEVAPRSDSEESGS
EEEEEEEEEEQPQPAQPALPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA
LARGLQSYYAVAHAVTERVDKQSTLMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL
GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA
FVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA
PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL
IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE
KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFE
LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN
EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDENRYST
GSGSGSASFPHTASTLCLNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR
RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSL
TEKQWLKVYMAIEEGTLEEIEEEVRQKKSSRKRKRDVDVGSATPTTSTRSRDKDDDSKKQ
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
RQKIEKEEDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGRRRTSRGSR
AKPVVSDDDSEEEQEEDRSGSGTEDD
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagatcctccaatgggaggaactcctcgtccagggccttctcctggaccc
gggccatcacctggtgcaatgttgggccccagtcctggaccctcgcctggctctgctcat
agtatgatgggacccagccctggaccaccttcagcaggacacactataccacctcagggg
tctgggggctatgctcaggacaatatgcatcagatgcacaagccaatggattccatgcat
gagaagggaatatctgatgatcctcggtacggccagatgaaggggatgggaatgaggcca
ggcgggcacacaggaatgggtcctcctccaagcccaatggatcagcattctcaaggttac
ccttctccgctcggtggttctgagcatgcctcaagcccagttccagctaatggtccatcc
tctggctctcaaatgtcatctggccctggaggagtcccgttagacggtactgacccacaa
gcattaggacaacagaaccggggcccaaccccttttaaccagaaccagctgcaccagtta
agagctcagattatggcctataagatgcttgccagagggcagcctttacctgaccatgtt
cagatggcagtgcagggaaaaagaccaatgcctggaatgcagcagcaaatgccgacgcta
cctccaccctctgtatctggtacaggaccagtacaaggagcagggcctgggcctggacca
ggaccaacacctccaaattacaacagacctcatggtataggagggcctaatatgcctcct
cctggaccctcaggagttcccccaggaatgcctgggcagccccctggtgcacccccaaag
ccctggcctgaaggaccaatggcaaatgctgcagcccccactagcacacctcagaaactg
attcctcctcagccaactggccgtccttcaccagcacccccagcggtacctcctgcagca
tctcctgtaatgccaccccaaactcagtcacctgggcagccagcccagcctgcccctatg
gtgcagctccatcagaagcagaatcgtatcacgccgatccagaagccaagaggacttgac
ccagtggaaatccttcaggagagggaatacagattgcaggctcgcattgctcacagaatc
caagaactagaaaacctgcctgggtccctggctggtgacctgagaaccaaagctaccatt
gaacttaaagcactaagactgcttaacttccagagacagctgcgtcaggaagtcgtggta
tgcatgagacgagacactgccctggaaacggcactgaatgccaaggcatacaaacgcagc
aagcggcagtccctgcgcgaggctcgcatcacggagaaactagagaaacaacagaagatc
gaacaagaacggaaacgcagacaaaagcaccaggaatacctcaatagcattctccagcat
gccaaggatttcaaagaataccatcgatccgtcacgggcaaaattcaaaagcttacaaaa
gctgtggccacttaccatgctaacactgagcgtgagcagaagaaagagaatgagaggatc
gagaaggagcgaatgcgcaggctgatggctgaggatgaagaagggtaccgtaagcttatc
gatcagaagaaagataagcgcttggcatatctactccagcagacagacgagtatgtggcc
aacctaactgagctggtgcgacaacacaaggctgcacaggtggcaaaggagaaaaagaag
aaaaagaaaaagaagaaggcagagaatgcagaagggcaaactcctgcaattggaccagat
ggcgaacctctggatgagaccagccaaatgagtgatctccctgtgaaagtgatccacgtg
gaaagcggtaaaatccttactggcacagatgctccaaaggctggacaactggacacctgg
ttggaaatgaacccaggatatgaagtagctcccagatctgacagtgaagaaagtgggtca
gaggaggaggaagaggaggaggaagaagagcagccgcaacctgctcagcctgccctgcct
gtggaagaaaagaagaagatcccagatccagacagtgacgatgtgtcagaagtcgatgcc
aggcacattattgaaaatgctaagcaagatgttgatgatgagtatggggtctcccaagct
ctggcgaggggattacagtcttactacgctgtggcccacgcagtcactgaacgagtggac
aaacagtccacgctcatggtcaatggcgtcctcaaacaataccagattaaaggcttagag
tggctcgtctctttgtacaataataacctgaatggtatcctagcagatgagatgggtctg
ggcaaaacgatccagaccattgctttaatcacatacctcatggagcacaagcgtatcaat
ggacccttcctcattatcgtacctctctcaacgttgtcaaactgggcatatgaatttgat
aaatgggctccttctgtggtgaaggtctcatacaagggctctccagcagcaagacgggca
tttgtacctcagcttcgaagtgggaagtttaatgtcttgctcacaacctacgagtacatc
atcaaagataagcacattcttgccaagattcgctggaagtacatgattgttgatgaaggt
cacagaatgaagaatcaccactgtaagctaacccaagtcctcaacacacactacgtagct
ccgcgtcgtttgctgctgacaggaactccactacagaataagctgccagagctgtgggct
ctactcaatttcctccttcccaccatcttcaagagctgtagcacatttgagcagtggttt
aatgctccatttgccatgactggtgagaaggtggatttgaatgaagaagaaactattctg
attattcgtcgtttgcacaaagtgctgcgtcccttcctgctgagacggttaaagaaggag
gtagaagcacagctgcctgaaaaggtggagtatgtgatcaagtgtgacatgtcggcatta
cagagggtgctgtacaggcacatgcaggccaagggagtgctgctcaccgatggctcggag
aaggataaaaagggcaaaggtggtacaaaaaccctgatgaacaccatcatgcagctgaga
aagatctgtaaccatccgtacatgtttcaacacatagaggaatccttttcagagcactta
ggtttcactggaggtattgtacagggactagacctgtaccgagcatctggcaaatttgag
ctcctagaccggattcttcccaaactacgagccaccaaccacaaggtgctgctgttctgt
cagatgacctcgctcatgaccatcatggaagactactttgcataccgtggcttcaaatac
ctcaggctggatggaactactaaagctgaagaccgcggcatgttgctgaagaccttcaac
gagcccggctctgaatatttcattttcctgctgagcactcgagccggagggctgggactg
aacttacagtctgcagatactgtgattatttttgacagtgactggaatccgcaccaggat
ttgcaggcccaggaccgagcgcaccgtattgggcaacagaacgaggtgcgtgtgctccgc
ctctgcactgtgaacagcgtggaggagaagatcctggctgcagccaagtacaaactgaat
gttgatcagaaggtcatccaggctggcatgtttgaccagaaatcctccagccacgagcgg
agagctttcctccaggctatcctagagcacgaggagcaggatgagaacagatacagcacg
ggcagcggcagtggcagtgcaagcttcccccacactgcctcaaccctgtgcctgaaccct
gacttggaggaaccacctctaaaggaagaagatgaagttcctgacgatgaaacggtcaac
cagatgattgcccgtcatgaagaggaatttgacctttttatgcgcatggacctggaccgc
aggcgagaggaagcacgcaatccaaagcgaaagccacgtctaatggaagaggacgagctg
ccatcctggattattaaggatgatgctgaagtggagagactcacgtgtgaggaggaggag
gagaagatgtttgggcgagggtcacgtcaccgtaaggaggtggactacagtgactcgctt
accgagaagcagtggctcaaggtatacatggctatagaggagggcacgctggaggagatc
gaggaggaggttcgtcagaagaaatcttcccgcaaacgcaagcgagatgttgacgtcggt
tctgccaccccgactaccagcacccgcagccgggacaaagacgatgatagcaaaaagcag
aaaaagcgcggcaggcctcccgccgaaaagctctccccaaacccccccaacctcaccaaa
aaaatgaagaagatagtggatgccgtgattaaatacaaggacagtagtagtggacgccag
cttagcgaagtcttcatccagttgccttctcgcaaagagctcccagagtactacgagctc
atccgcaagccagtggatttcaaaaaaataaaggaacgcatccgcaaccacaagtaccgc
agcctgaatgatctggagaaggacgtcatgctgctgtgtcagaatgcacaaacctttaat
ctggaaggctctctgatctacgaagactcgatagtgctgcaatccgtcttcaccagcgtg
aggcagaaaattgagaaagaggaagacagtgaaggtgaggagagtgaggaggaggaggaa
ggagaagaggaaggatctgaatcagagtctcgctccgtcaaggtgaagatcaagctaggc
agaaaggagaaagcacaggaccggctgaagggtcgcaggcgcaccagccgcggctcccgg
gccaagccagtggttagtgatgacgatagtgaagaggagcaggaggaggatcgctcagga
agtggcaccgaagatgattaa
DBGET
integrated database retrieval system
