Chelonoidis abingdonii (Abingdon island giant tortoise): 116825531
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Entry
116825531 CDS
T07367
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116825531 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cabi04121
]
116825531 (SLX4)
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116825531 (SLX4)
Ubiquitin system [BR:
cabi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
116825531 (SLX4)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116825531 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
30K_MP_C_Ter
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
116825531
NCBI-ProteinID:
XP_032637527
LinkDB
All DBs
Position
Unknown
AA seq
1888 aa
AA seq
DB search
MDELDNDFKELCANLLSRVKKKAGDAEGGRKVQSRTRSTATKSKLKKSKSTAKSKSQHNS
SVGKRVGWPGCTDPNEQALGHEPEGEATACGNDGPPLGDENGNPSSPIQLDAVAPNCNQN
SLAGSDKRRSSFAAAAEPATSTSSPAKTLQISGTRVRVAELVLERMQQFKRVEPKQLKHT
RGSSLPETVADGNIPEVILEKNQQGNVTTPDLPAKEPDVALAVALQQELIEEVPGSLEEA
GLFFCQICQKDLSAMNATRREQHVNRCLDEMEKSQASSSSNPQVPECPICGKQFHTPKSR
ASHLKSCAVKMEVPPQLLLQAVQSQALALGDGLSVAPSDQLSRSKRKGSSKEKESKKKRK
TSKVETKDEDLLVAMAMSRSLLEQIRQEQAKSVTSIKLESALPIKWKPGAEKKRRKNTPR
TPPPLLLQDPETAHKRIQSRMAMLLTEEVEFPSTPPLPASRILEEEPRKAAWLLTLPNDQ
HCILWEYSTLTGPCVPESFYAAGLTPPILPWKPVQSGTILPSARSDQPQLSQQLQTSSNH
LDPTSVGLGNRTTDDPQADPDGEQQFLSCSQKDVQTLQDLVELAGEGLTLTQWNIDVDHT
SEVKPLRGESVASDIPLSGFVPPSKVKMCQSSNLHTFSLRSLAADFSGMVNNPHLSDVQF
QVDSGEVLYAHMFVLYARCPQLTEVVHSEGFLVEEDGNLRTRRVLLSEVTVEAARVFLQY
LYAADTSIPAQVLSDVGALAVRFGVNELISVCGNSAGEKEQHAVVDSGDELFSVGEEENC
ENRAENFQELLRSMWVDEDEEEVALLKPEDQKEEDNEKVDEQDLEEIYEFVATQRKIVQD
EAEVEEGTGSCTYSETEEAQNVNRPPEDEEVEVCESPSTSSKIKEWKENFCVGKSSCELP
GQEKKIPGISRNESMSVTRIATVHLQDKPCECGDVAASHGRASDEREGFQRMPKVVKVFR
FSQISQSEEKNDAWEKLFPSCRHNGADLSKSYDPVFSATHGEHCEPSPLNEDNKESEEIF
SETHVEVNKPPVHHQSQKDLLSVRSDLYSSPLINPCSPVLPAVGSSPMSPESNRTFSKVS
TEMSLISAPKQNESKALFLSDDASFQKASEQNEASGLEKIIKNTLSPAKSPHVDLKKQKH
VPTCSSLVLTTQNTASHVNQEAEVILLLDSDEEMELEQMKKKSVSESSLKEISRQSDCNC
KKVEQEHEVPKSGPISVANIEIHQREFEVSLGSQDKMHSENAVKLSGEMPLNNQVRTCID
SRLNLSHEESSSVDASWLVPDTPLLTRSRNCSTQTQATSMCCLRSQESKHRTKALLVNIS
DCKQAGETVKIPEITSALLLATSSQKHLLTENSSVSTKTSPDSPLGQSWKDSLQVSPAPL
SPACVCVKEKSSENPSSLIRGLPCCELSLENKTDISVVEVEDSEEEKEVAPLPSSSSFLL
GDEPPIPVDDDCWSVERLSPIKDNNRVLERLNCANTGSPIHGKSGSQHDQWKSPIRALEI
TGSTPLRGNPVDSRKTLLCHEESPVEKNSSVSNKLSFLNSKVWDDWDEDELPEILPLSQR
VSAAAAAQNTQPLKTPDPVCHERNQPPRVPITPIPAYSIMETPKLKKELNRFGVRPLPKR
QMVLKLKEIFQYTHQIMSSDSEDEIPSSQPPLQEATAKYPSQPQADLIELREESSKASSV
GRKQKLGVSVPSLPVLGSGDADSSAGPSTTGYLRTQKTAETKGHPGGARGLKGDILSPAT
SPVKGSLVGSADGEVLSASQESAASSVAGSDNSFGSQSSSSNEFETGALTSEEDEGIPAS
QAAAREADKLEAVRRYIHSNPVLHRKILLYEPFELTGLQAELKQNGIKIALGKLLDFLDA
HCITFTTAGARKEKRQQRGGKKKGCKRY
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactggacaatgattttaaagaactctgtgctaacctattgagcagggtcaag
aaaaaggctggagatgccgagggagggaggaaggttcagagcaggacaagaagcactgca
acaaaaagcaaattaaaaaagagcaagtcaactgctaagagcaaaagccagcataactcc
tctgttggaaagagagtgggctggccagggtgcacggaccccaatgagcaggcattgggg
catgaaccagaaggtgaagctacagcctgtggaaatgatgggcctccgctgggagatgaa
aatggaaacccttcttctcccattcagttggatgctgtggcaccaaactgtaatcagaac
agcctggcaggcagtgacaagcgcagatcatcctttgctgctgctgcagaaccagcaacc
tccacctcatcccctgcaaagacgctccagatctcaggaaccagggtgcgggtggcagag
ctggtgctggagaggatgcagcagtttaagagagtggaaccgaaacagctgaaacacacc
cggggcagcagcttgccagagacagtagcagatggaaacatccctgaggtgatcctggag
aagaaccagcaagggaatgtgaccactccggatctgcctgcgaaggagccagatgttgct
ctggccgtggccctccagcaggagctcatagaagaagtacctggaagtctggaagaggca
ggcttatttttttgtcagatctgtcagaaggacctctcagctatgaatgcaacacgacgg
gagcagcatgttaacaggtgtctggatgaaatggagaagtcacaggcatcctcttccagc
aacccacaggtccctgagtgccccatctgtgggaagcagttccatacaccaaaaagccga
gccagtcacttgaaaagctgcgctgtcaagatggaggtccctccgcagttgcttctccag
gcagtgcaatcgcaggcattggccctgggtgatgggctctctgtagcacccagcgatcag
ctcagtaggtcaaagcgaaaaggctcctccaaagagaaggagtcaaagaaaaagcggaag
acatccaaggtggaaaccaaagatgaggatcttctggttgccatggcaatgtcacgatct
ctgctggagcaaataaggcaggagcaagcaaaatcggtaacaagcattaaactggagagt
gctttgccaatcaagtggaagcctggagcagagaaaaaaaggcgcaagaacaccccccgc
acacctcctccattgttacttcaagatccagagacagcccataaacggattcaaagccgg
atggccatgctactaacagaggaggtggagttccctagcacccctccgctccctgccagc
aggattttggaggaggagcctaggaaggcagcctggcttctaactttgcccaacgaccag
cactgcattttgtgggagtatagtactttgacaggaccctgtgtcccagagtccttctat
gcagcgggattaacccctcctattttgccttggaaacctgtgcagtcagggactattttg
ccatcagcgagatctgaccaaccacaactatctcagcagttacagaccagcagcaatcat
cttgatcccacttctgtggggcttggaaacagaactactgatgatccccaggcagaccct
gatggagagcagcagtttctatcttgcagccagaaggatgttcagactctgcaggacctg
gtggagctggctggggaaggacttactctcacgcagtggaacattgatgttgaccacacc
agcgaagtgaagccactgagaggagaatcagtggccagcgacattccacttagtggcttc
gtccctccatccaaggtgaagatgtgccagagcagcaaccttcacacattctcactcagg
tcgctggctgccgatttcagtggaatggtcaacaacccccatctaagtgacgtccagttc
caggtagacagtggggaagtcctttatgcccatatgtttgtgctttatgcacggtgccca
cagctgactgaagttgttcacagtgaaggtttcttagtggaagaggatgggaatttgcgg
acccgtcgagtgttgctaagtgaagtgacagtcgaggcagcccgggtgtttctgcagtac
ctctatgcagctgataccagtatccctgcccaggtgctctctgatgtgggagctcttgct
gtcaggtttggtgtgaatgaactgatctctgtatgtggaaacagcgctggggagaaggag
cagcatgctgtggttgactcaggagatgaacttttctctgtgggggaagaagagaattgt
gagaacagagctgagaacttccaggagctcttgaggtcaatgtgggtagatgaagatgag
gaagaagtagctttgctgaaacctgaagaccagaaagaggaagacaatgagaaagtggat
gagcaggacctggaggaaatttatgagtttgttgccactcagcgaaagattgttcaagat
gaagcagaggtggaagaaggcacaggcagctgcacttacagtgaaacagaggaggcccaa
aatgtgaaccgaccacctgaggatgaagaggttgaggtgtgtgaatctccctcaacaagc
agcaagattaaagaatggaaggaaaacttttgtgtgggaaaatccagctgtgaattgcct
gggcaagaaaagaaaatcccaggtataagtaggaatgagagcatgagtgttacacgaatc
gctactgtgcacttgcaggataagccttgtgagtgcggtgatgttgcggcttcccatggt
agagcctctgatgaaagagagggctttcagagaatgcccaaagttgtgaaggtttttaga
ttctctcagatttcacaaagtgaagaaaagaatgatgcctgggaaaaactgttccctagt
tgtcgacacaatggtgctgacctcagtaaaagttatgatcccgtgttttccgcaacccat
ggggaacattgtgagccttctccactaaatgaagacaacaaagagtcagaagagattttc
agtgaaacacacgttgaggttaataaaccacctgttcaccatcagtcacagaaagacctt
ctgtcagttaggagtgatttgtatagcagtcctcttatcaacccttgctcaccagttttg
ccagctgttggttcatcacctatgtctccagaatcaaacaggacattttccaaagtatcc
acagaaatgtctctcatatcagctccaaagcaaaatgaaagtaaagcactctttctgtct
gatgatgcatccttccaaaaagccagtgaacagaatgaagcttcaggacttgagaagatc
ataaagaacacactttctccagcaaagtctcctcacgtagatttaaaaaagcaaaaacat
gtcccaacttgctcatcgttggtcctcacaactcagaatactgcttctcatgtgaaccaa
gaggctgaagttattcttttgctggattctgatgaagaaatggagttagaacaaatgaag
aagaaatcagtttctgaatcttccctgaaggaaatctccaggcaatcggattgtaactgt
aagaaagtggagcaagagcacgaggtaccaaaatctgggcctatttcagttgctaacatt
gaaatacaccagagagaatttgaagtgtcactaggaagtcaagacaagatgcacagtgag
aatgctgtaaagctgtcaggagagatgcctcttaacaaccaggttaggacctgtattgat
agcagactgaatctgagccatgaggagagctctagtgtggacgcctcatggttggtgcca
gacacacctcttcttaccagaagcaggaactgctccacacagactcaggcaacaagtatg
tgttgtttgaggagtcaagagtctaagcataggactaaggctttattggtaaatattagt
gactgtaaacaagctggggaaactgtgaagattccagagataacttcagctctgttactt
gcaacctcctcacaaaaacatttgcttacagagaactcgtcagtcagcacaaaaacctct
cctgacagccctttaggtcagtcttggaaggattctctgcaagtttctccagctccactc
tcacctgcctgtgtttgtgtgaaagagaagtcttcagaaaacccatcttcactcatacga
ggccttccatgctgtgaactgtctctggagaataaaacagacattagtgtggttgaggta
gaggacagtgaggaggaaaaggaggtggctccactcccttcgagtagcagcttcctgctc
ggtgatgagccaccaatcccagtcgatgacgactgctggagtgtcgaacgtctgtcacca
atcaaagataacaacagggtgcttgagaggttgaactgtgcaaataccggcagtcccatc
cacggaaaaagtggctctcagcacgaccaatggaagagcccaatcagagccctggaaatt
acaggtagcactcctcttagaggaaatcctgttgacagtagaaagaccttgctttgtcat
gaagagagtcctgttgagaaaaattcttcagtgagcaataagctaagttttctgaactct
aaagtctgggatgattgggatgaagatgaactcccagagattcttcctctctcacagaga
gtatcagctgcagcagctgcccagaatacccagcccctaaagactcctgaccctgtctgt
catgagagaaaccagccccccagagttcccataacaccaataccagcttactccatcatg
gagaccccaaagctgaagaaggaactgaacagatttggagtccgtcctctcccaaaacgg
cagatggtgttaaagctgaaggagatattccagtatactcatcagatcatgtcctctgac
tcggaggatgagatcccatcctcccaaccacccctacaggaagccactgccaagtacccc
agccaaccccaagcagacttgattgaactgagagaagagagttccaaagcctccagtgta
gggcgcaagcaaaagctgggggtttcggtcccttccctgccagttctgggcagtggtgat
gctgacagctcagcgggcccctctacaacaggctatctgaggactcagaaaacagctgaa
actaaaggccacccaggaggagccagagggctaaagggagatattttgtctccagctaca
tctccagttaaaggttctctggtgggcagtgctgatggagaggtgctctcagcatctcag
gagtctgcagcttcttcagtggctggaagtgacaactcctttgggtcacagagctcttct
tccaatgagtttgagacaggtgcccttacatctgaagaggacgaggggatcccagcatct
caggctgcagcccgggaggcagataagctggaggcagtgagacgctacatccattcaaat
ccagtcctgcaccggaagatcctcctttatgagccctttgagctaaccgggctgcaggca
gagctgaagcagaatggcattaagattgcactggggaaattgctggactttttggatgct
cactgtatcacctttaccacagccggggcacggaaagagaagcggcagcaacgtgggggc
aagaaaaagggatgcaaacgatactga
DBGET
integrated database retrieval system
