Chelonoidis abingdonii (Abingdon island giant tortoise): 116826649
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Entry
116826649 CDS
T07367
Symbol
DDX46
Name
(RefSeq) putative ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116826649 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cabi03041
]
116826649 (DDX46)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116826649 (DDX46)
Spliceosome [BR:
cabi03041
]
Complex A
U2 snRNP components
U2 related factors
116826649 (DDX46)
Complex B
116826649 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
116826649
NCBI-ProteinID:
XP_074924249
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All DBs
Position
7:99414306..99454705
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AA seq
1036 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSRSRSPADKRTKRGEDRRSRSRDRERRRERSRSRDKRRS
RSRDRKRLRRSRSRERERSRERRRSRSRERKRSRSRSRRSRSTSPGKNKKTENRSRSKEK
TEGVEVSKEKKKEKEDKEEEKDKDVSNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIG
ELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEAEEIEDEELDPLDAYMEEVKEEVKKFN
MRSVKGGGGNEKKSGPTVTKVVTVVTTKKAAVESEKKKGELMENDQDAMEYSSEEEEVDL
QTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTLDEVNVYRLEMEGIVVK
GKGCPKPIKTWVQCGISMKILGSLKKHGYEKPTPIQAQAIPAIMNGRDLIGIAKTGSGKT
IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGFRVVCVYGGT
GISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV
MRIVDNIRPDRQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQEVIVIEEE
NKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIIN
DFKNGVCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAFTFI
TEDQARYAGDIIKALELSGKPIPAELEKLWSDFKDQQKAEGKTIKKSSGFSGKGFKFDET
EHALANERKKLQKAALGLQDSDDEDTALDIDEQIESMFNSKKRVKDMAAPGTSNVPTPTA
GNAEKLEIAKRLALRINAQKNLGAEAQVLVPFHFKDVMQQATNAILRGGTIQAPTVSAKT
IAEQLAEKINAKLNYVPIEKQEEEKQEGGQSESFKRYEEELEINDFPQTARWKVTSKEAL
QRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIR
LQNSYQPTNKGRYKVL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgggccgagagtccagacattatcggaagcgctccacatcacgtggtcgttccggtagc
cgctctagaagtcgatctccagctgacaaaagaacaaaacgtggagaagacagacgttct
agaagtagagatagagaacgtaggcgtgagaggtcacgcagcagggacaagaggagatct
cggtcacgggacaggaagcgcctgagacgttcaagaagcagagagagggaacggagcaga
gagagaagaagatcacgcagtcgagagaggaaacggtccagaagtagaagtagacggtcc
cggtccaccagtcctggcaagaacaagaaaacagaaaacagatcaaggtctaaagaaaag
acagaaggtgtggaagtttccaaagaaaagaaaaaagaaaaagaagacaaagaagaagaa
aaggataaagatgttagtaactttgatcagaacaaactagaggaggaaatgagaaaacga
aaggaaagagtggagaaatggagggaagaacagcgcaagaaggctatggaaaacatagga
gaactgaaaaaagaaattgaagagatgaaacaagggaaaaaatggagcttagaagatgat
gatgatgacgaggaggagactgcagaaggggaaaaagaagcagaagagattgaagatgaa
gaattagatccactggatgcttacatggaagaagttaaagaagaggtcaagaagtttaat
atgagaagtgtgaaaggtggaggtgggaatgaaaagaagtctggaccgactgttaccaaa
gtagtgactgtggtgacaaccaaaaaggcagctgtggaatcagaaaagaagaaaggcgag
ctcatggagaatgaccaagatgcaatggagtattcgtcagaagaggaggaagttgatctt
cagactgccctgacgggctatcagaccaaacagaggaagctgttggaaccagtggatcat
gggaagatagaatatgagcccttcaggaaaaacttctatgttgaagttccagagctggct
aaaatgacgctggatgaggtaaatgtatacaggctggaaatggagggcattgtagtcaag
ggaaaaggctgccccaagccaatcaaaacctgggtacagtgtggtatttccatgaagatt
ctcggttctcttaagaaacatggctatgaaaagcccactcccatccaagctcaggctata
ccagccattatgaatggacgtgacttgattggcattgctaaaacaggaagtggaaagact
attgcatttctgttacctatgttcagacacatcatggatcagaggtcattagaagaagga
gaaggtccaatagctgtcatcatgaccccaactcgagagttggctttacaaattaccaag
gagtgtaagaagttctcaaagacacttgggtttagagttgtctgtgtctatggaggaaca
ggaatcagtgaacagattgctgaactaaaaagaggtgctgaaattattgtttgcacacct
ggacgtatgattgacatgttagcagctaataatggtcgggtgacaaaccttcgcagagtt
acatatgttgtactggatgaagcagacagaatgtttgacatgggttttgaacctcaggtc
atgcgcattgtagataacatcagacctgatcgtcagacagtcatgttctctgccaccttc
cccagagctatggaggcattagctcgccgtattctgaataagccaattgaggtacaagtt
gggggcaggagtgttgtctgttctgatgtggaacaagaggtgatcgtgatagaagaagag
aacaagttcttgaagttacttgagcttctgggacattatcaagagaaaggatcagtcatc
atatttgttgataaacaggaacatgctgatgggctgctgaaagatttaatgagagcctct
tatccctgcatgtcacttcacggaggtattgatcaatacgacagagacagcataattaat
gattttaagaacggtgtatgcaaacttcttgtggccacatctgtagcagcacgaggcttg
gatgtaaagcaactaatgctggtagtcaattatagctgtcccaaccattatgaagactat
gtgcacagagcaggccgaactggacgagctggcaacaaaggatttgcattcactttcatt
actgaagatcaagcacggtatgctggtgatataattaaggctttggaattgtcagggaaa
ccaattcctgctgagctagagaagctctggagtgacttcaaagatcaacagaaggctgag
gggaaaactattaaaaagagcagcggattctctggcaaaggattcaagtttgatgaaacg
gaacacgctttggctaatgagcgaaagaaactacaaaaagctgctcttggcttgcaggat
tcggatgatgaggatacagctcttgatattgatgaacaaattgagagcatgttcaattca
aaaaagagagtgaaagacatggcagcaccgggaacatctaatgttcctacaccaacagct
ggtaatgcagaaaaactggaaattgccaaaaggctagctttaagaattaatgctcagaag
aatcttggagcagaggcacaagtattggtcccttttcactttaaggatgtgatgcagcag
gctacaaatgctatcttgagaggaggcacaattcaggctcctactgtatctgccaaaact
attgcagagcaattggctgaaaagataaatgccaagcttaattatgtgcccatagaaaaa
caagaggaagaaaaacaggagggaggacaaagtgaatcgtttaagagatatgaggaggaa
ttagagatcaatgacttcccacagactgctaggtggaaggttacctccaaggaagcactt
cagagaatcagtgaatattctgaagctgccattacaatcagaggaacgtatttccctccg
ggcaaggagcccaaggaaggagaacgaaaaatttacttggctatagagagtgccaatgaa
ctggctgtgcagaaagcaaaggcagaaatcaccaggcttataaaagaagaacttatcaga
ctgcaaaattcataccagccaaccaacaaaggaagatacaaagttctgtaa
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