Chelonoidis abingdonii (Abingdon island giant tortoise): 116826773
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Entry
116826773 CDS
T07367
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cabi03041
]
116826773 (YTHDC2)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116826773 (YTHDC2)
Spliceosome [BR:
cabi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116826773 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
ATPase
Ank_4
PhoH
AAA_7
AAA_16
T2SSE
AAA_29
SRP54
AAA_30
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
116826773
NCBI-ProteinID:
XP_032639625
Ensembl:
ENSCABG00000009219
UniProt:
A0A8C0GQU4
LinkDB
All DBs
Position
Unknown
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPTSALSGGGPAAASGSGSGRARGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTIKKKDGSELAHTVMACSLTP
NTKHAIRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVRIIKENKVVLIVGETGSGKTTQIPQFLLDDCYKNGIPC
RIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDILQKQTTLKLILSSAALDVNLFIRYFG
SCPVIHIQGRPYEVKEMFLEDTLRSTGYTNKEMVKYKKEKQQEEKQQTTLTEWYSAQDNT
SKPESQRQRSVPSVSEEYDLLDDGGDTVFSQLTEKDVNCLEPWLIKEMDSCLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLIGMGANIHSKSSNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQANGGDLSAEDRELLKAYHHSFDD
EKVDLDLIMNLLYNICHSCDAGAVLIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFML
HSNMQTSDQKKVLKTPPLGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALNCVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPINCPIADFLMKAPDPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKCAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKGALVAGMYPNLVHVDRENLVLTGPKEKRVRFHPASVLSQPQYKKIPPAN
GQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVSLFCGPARLPSNALQEPSSFR
VDGVLNDSSDSEIEDRTTANLAVLKLDEWLHFKLDPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNSSRKS
SAETEFSDDSSNAEKVLMKSTSPAFHPPQKYKERGILHSKRSSDDRSDQSSVKSTDSSSY
PSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLDISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFARMSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLGEKNTTD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccagcagcgtgtccccccgaccacccaccagcgccctgtctggcgggggc
ccggccgcagcctccggctcgggcagcggccgggccagggggctgaaggacatccgcatc
gacgaggaggtgaagatcgcggtgaacatcgccctggagcggttccgctacggggaccag
agagaaatggaatttccttcttctttgactagtactgaaagagcatttattcaccgactg
agtcagtctcttggactgatttctaaaagtaaaggaaaaggagcaaatagatatttaacc
ataaagaagaaagatgggtcagaattggcacatacagtaatggcctgtagtttgaccccc
aatacaaaacatgctattaggagcctaattcagagatttcctgtgaccaataaagaacgc
actgaacttctaccaaaaacagaacgaggaaatgtgtttgctgttgaagctgagaacaga
gaaatgagtaagacaagtggacgacttaacaatggcatccctcagattcctgtgaaaagg
ggggaatctgaatttgattccttcaggcaatctctaccagtttttgaaaaacaggaagaa
attgtcagaattattaaagaaaataaagttgttctgattgtgggagaaactggatcagga
aaaactactcagattcctcaattccttcttgatgactgttacaaaaatggaattccatgt
cgcatattttgcactcagccaagacgtttggcagctattgctgtggctgaaagagttgct
gcagaaaggagagaaaagattggccagacaattggctatcagatccgattagaaagcagg
gtttctccaaagacgctgctaacattttgcactaacggtgtattacttcgtacgctgatg
gcaggagacagcacactatcgaccgtgacgcatgttattgtggatgaagtgcatgagagg
gatcgattcagtgacttcttgctaacaaagttaagagacatattgcaaaaacagacaact
ttgaaactgattctttctagtgctgccctggatgtaaatctctttatcagatattttgga
agttgcccagtgatacacattcaaggaagaccatatgaagttaaggagatgtttctggaa
gataccttacgaagtacaggatatacaaataaagagatggtaaaatacaaaaaagaaaaa
cagcaagaagagaaacagcaaaccactcttactgaatggtattctgctcaagacaacact
agcaaaccagaatctcaaagacagagatctgtcccgagtgtgtctgaagaatatgacttg
ttggatgatggtggtgacacagtgttcagtcaactgactgaaaaagatgtgaattgcctt
gaaccatggttaataaaagaaatggattcttgtctctccgatatatggttgcataaagat
gttgatgcctttgctcaggtgtttcaccttatcttaactgaaaatgtcagtgttgattac
agacacagtgaaaccagtgcaactgcactaatgattgcttcaggaagaggtttcttaagt
caggtagaacagctgattggaatgggagcaaatatccacagcaaatcatccaatggctgg
atggctttggattgggctaaacattttggacagactgagattgtagatcttctggaatct
tacagtgcttcattagagtttggaaatctggatgaaagttctctagtgcaggcaaatggt
ggtgatcttagtgcagaagacagagaactgttgaaagcttatcatcacagttttgatgat
gaaaaagtggatctggatctgataatgaacctactttacaacatctgtcatagttgtgat
gctggagcagttttaatttttcttcctggatatgatgagatagttagcttaagggatcgc
attctgtttgatgacaagaggtttgctgataatgctcacagatatcaagtttttatgctg
cattcaaatatgcaaacatcagatcagaagaaggtgctaaaaactccacctctgggcatt
cgcaaaataattctttctactaatattgcagaaaccagcatcacagtcaatgatgttgtc
tttgttattgactctggcaagatgaaagagaagtcctttgatgcgctgaactgtgttacc
atgctaaaaatggtgtggatttcaaaagccagtgccatccagagaaaaggcagggctgga
cgctgtcggcctggaatctgtttccgactcttcagcaggctccggtttcagaatatgttg
gaatttcagactccagaacttctaagaatgccgctacaggaactttgtttgcacacaaaa
ctgctagcaccaattaactgtccaattgctgactttttgatgaaagccccagatcctcca
ccagccttaattgtgagaaatgctgttcagatgcttaagacaatagatgccatggatacc
tgggaagatctcacggaacttggttatcatctggctgacttacctgtagagccacacctt
ggtaaaatggtgttgtgtgctgttgttttgaagtgcctggatcctattcttaccattgct
tgcactcttgcatatcgagacccttttgtcctacctacacaggcctcacaaaaatgtgca
gccatgctgtgtagaaaacgttttactgcaggaacatttagtgaccatatggcgcttctc
agggcattccaggcatggcagaaggcacgaagtgatggctgggagagagccttctgtgag
aagaattttctctctcaagctactatggaaatcattataggaatgagaacacagttgctt
ggtcagctcagagcatcaggttttgttagagccagaggtggaggtgatattcgagatgtt
aacaccaattctgaaaattgggctgtagtgaaaggtgctttagtggctgggatgtatcca
aatctagtgcatgtggatagagagaaccttgtattgactggcccgaaggagaagagagtg
cgatttcatcctgcctctgttcttagccagcctcaatataaaaagattcctccagcaaat
ggtcaagctgcagcaattcaagcacttcccacagactggcttatatatgatgaaatgact
agagcacacaggatcgccaacatcagatgctgttcagctgtgacgcctgtcactgtgtcc
ctcttctgtggtccagctcggctgccaagtaatgctttacaggagccctcctcctttaga
gtggatggtgttcttaatgatagtagtgatagcgagatagaagacagaacaactgctaat
ctggctgtgttgaagctagatgaatggctacatttcaaactggatcctgaggctgccagt
ctgctgctgcaactcagacagaaatggcacagtttatttctgcgccgcatgcgagctcct
tctaaaccttggtctcaagttgatgaagcaactataagagcaatcatagctgttttaagt
actgaagagcagtctgcaggcttacagcaaccgtcaggaattgggcaaagaccaagacct
atgtcttctgaagaacttcccttagcatcttcttggagatcaaatagcagtaggaaaagc
tcagcagaaacagaattctctgatgactcttctaatgctgaaaaagtcctaatgaaatct
acatctccagcatttcacccaccacagaaatacaaagaaagaggtatcttgcattctaaa
cgaagttcagatgacaggtcagatcagtcatctgtgaaatccacagacagtagtagttat
cccagcccatgtgccagtccttctcctccatcatctggaaagggatccaagtctccttca
cccagaccaaatatgccaattcggtacttcattatgaagagcagcaacttgagaaacctt
gatatttctcaacaaaaaggtatctggtctacaactccaagtaatgaaagaaaactaaat
agagccttttgggaaagcagcatggtttacttggtattttcagttcaaggatcaggacat
tttcagggttttgctagaatgtcttcagagataggacgtgagaaaagtcaggactggggc
tctacaggcttgggaggagtgtttaaggtggagtggatccggaaagaaagtcttcccttt
cagtttgcacaccacttactcaacccttggaatgataataagaaagtacaaattagcaga
gatggccaggaattggaaccacaggttggagaacagttgctacagctttgggatcgtatt
cctttaggagagaaaaacacaactgattga
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integrated database retrieval system
