Chelonoidis abingdonii (Abingdon island giant tortoise): 116826880
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Entry
116826880 CDS
T07367
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116826880 (PTBP1)
03041 Spliceosome [BR:
cabi03041
]
116826880 (PTBP1)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
116826880 (PTBP1)
Spliceosome [BR:
cabi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116826880 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
116826880
NCBI-ProteinID:
XP_032639849
Ensembl:
ENSCABG00000003416
UniProt:
A0A8C0G6S7
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MDGIVQDITVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
IHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVSYYTTVTPV
LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIISASPYAGAGFPPAFAIPQAGLSVPNVHGALAPLAIPSAAAAAAAAGRMGIPGLTGAG
NSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN
GQKLNGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT
LHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIELHNHD
LGENHHLRVSFSKSTI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtccaagatataacagttggtacaaagcggggatctgacgagcttttc
tctacttgtgttactaacggaccctttatcatgagcagcaactctgcttctgcagctaat
ggaaacgacagcaaaaaattcaaaggtgacagtagaagtgcaggggtcccttcgcgagta
atccacgtccgtaaactccccagtgacgtcacagaggcagaagtcatttctttgggatta
ccttttggcaaagtcaccaatcttctaatgctgaaaggaaaaaatcaggctttcatagaa
atgaatactgaggaagcagccaacaccatggtaagttactacaccacagtcactccagtc
cttcgaagccagcccatctacattcagttctccaaccacaaggaactcaaaacagacaac
tctccaaaccaggcacgggcccaggcagctctgcaagcagtgaactctgttcagtctgga
aacctggcactgtcagcttctgctgctgcagtggatgcaggaatggcaatggcaggtcag
agccctgtcttgaggatcattgtggaaaatctcttctatcctgtcactctggatgtcctg
catcagattttttccaagtttggcacagtgctgaaaataattacattcaccaagaacaac
cagttccaggccctgttacaatatgctgaccctgtgagtgctcagcatgccaaactgtct
ttagatgggcagaatatctacaatgcctgttgcacattgcgcattgacttctccaaactc
acaagcctcaatgttaaatacaacaatgataagagcagagattacacacgaccagattta
ccttctggggatagccagccctctcttgatcaaaccatggcagctgcttttggagctcca
ggaataatttctgcctctccatatgcaggagctggctttcctcctgcctttgcaattcct
caagcaggcttatcagttccaaacgttcatggagcacttgctcctttggctatcccatca
gcagcagctgcagcggctgcagcaggacggatgggcattcccggcctcactggggcaggg
aactccgttctgctggttagcaatctgaaccctgagagagttacaccccaatgcctcttt
attcttttcggagtctatggtgatgtgcaaagggtgaaaatcttatttaataagaaggag
aatgccttagttcaaatggctgacggaaaccaggcccagcttgcgatgagtcacttaaat
ggtcagaagcttaatggaaaacccatccgtatcaccctatccaagcatcagacagtacag
cttccccgtgagggacaggaagaccaaggattgactaaagactatggaaactctcctcta
catcgtttcaagaaaccaggctccaaaaacttccagaatatcttcccaccttctgctacc
cttcacctctccaatatcccaccttcaataactgaagaagaccttaagatgctgttctca
agcaatggtgggatggtgaaaggattcaaattcttccagaaggaccgtaagatggctcta
atccagatgggctctgtggaagaagccattcagtcactcattgagctccataatcatgac
cttggtgagaatcaccacctgcgtgtgtccttctcaaagtccaccatttaa
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