Chelonoidis abingdonii (Abingdon island giant tortoise): 116827108
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Entry
116827108 CDS
T07367
Symbol
CCDC88A
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cabi03037
]
116827108 (CCDC88A)
Cilium and associated proteins [BR:
cabi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
116827108 (CCDC88A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
HOOK
APG6_N
GAS
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
116827108
NCBI-ProteinID:
XP_032640248
Ensembl:
ENSCABG00000005031
LinkDB
All DBs
Position
Unknown
AA seq
2045 aa
AA seq
DB search
MENEIFTPLLEQFISSPLVTWVKTFGPLAGGNGSNLEEYVALVDGIFLNEVMLQINPKST
SQRVNKKVNNDASLRIQNLSILVRQIKSYYQETLQQLIMMSLPNVLIIGRNPFSEPGTEE
IKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTRAAVAAHIQEVTHNQENVFDLQWMDVSI
LSQEYIEPLLKNMALHLKRLIDERDEHSETIVELSEERDCLHFLPHASAAQSPCGSPGIK
HTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEAELKRLQQENMNLLSD
ARSARVYRDELDVLREKAIRVDKLESEVSRYKERLHDIVFYKARVEELKEDNQVLLETKT
MLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQKQ
SMDESLHLGWELEQMNRTTELSEVPRKSLGHEVNELTSSRLLKLEMENQSLLKTVEELQN
VVGSVEGSNSKILKMEKENQRLSKKLEGLENEIKQEKQSLQNSQNLSKDLMKEKAKLEKT
IETLRENSERQIKILEQENEHLNQTLGALRQRSQISAEARVKDIEKENKILHESIREASS
KLNKIEYEKKQMRKELEHYKEKGERAEELENVLHHLEKENELLHKKITNLKITCEKIEAL
EQENSDLEVENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRTVESLKCTSIKMA
QLQLENKELESEKKQLKKGLELMKASCKKTERLEVSYQGLDTENQRLQKALENSTKKIQQ
LESELQDLESENQTLQKNLEELKISSKRLEQLEKENKLLEQETSQLEKDKKQLEKENKRL
RQQAEIKDSTLEENNIKISNLEKENKSLCKEIGIFKESCVRLKELEKENKELVKRATIDK
KTLVTLREDLVNEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESKL
ESTLKKSLEIKEEKIAALEARLEESTNLNQQLRQELKTVKKIYEALKQRQEEERTVQNSP
PRTGEETQSVNKWEKENQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNN
NLQAQILSLQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSALEN
ENESILKEREDLKSLYDSLVKDHEKLEHLHERQASEYESLIAKHGSLKSAHKNLEVEHKD
LEDRYNQLLKHKVQLEELEKLLKVEQEKMLLQSKKHKTVAAEYKKLCDENDRLNHTYNQL
LRENEVLQTDHKNLKSLLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLK
GNLEEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKI
MDQYKFYEPSPPRRRGNWITLKMRKLIKSKKDVNRERLKSLTLTPTRSESSEGFLQLPHQ
DSHDSSSVGSNSLEDGQTLGTKKSSMIALKRLPFLRNRPKEKDKMKAIYRRSMSMNDLVQ
SMVLAGGQWTGSSEHLEGLDDVSTGKRKKELGAMAFSTTAINFATVNSSSGFRSKQLLNN
KDTTSFEDVSPQGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKAGGINNQS
RPQSHSSGEFSLLHEHEAWSSSSSSPIQYLKSHTKSSPMIQEKMPETVDNQGKQKIKTGS
PGSEVVTLQQFLEESNKVTSTEIKCASQENLLDEVMKSLSESAELAGKEKLSKQSSVSSG
IVESLSVKNTVDFSDGRSAKPEQLVRPSPRKTEDTYFTSSSIKLMSGTQGKVKSIKEKEQ
TNPSQRQSKDCSPYATLPRASNVISTAEGTTRRTSIHDFLSKDSRQPVSIDPAPSTADRS
IPSASSEYRAHQQSSSFFHYTSYNVDSIPQNDLDNTIKPDHSRYKSEKPRNSRMGKSNVV
DKTSSTNVFSDKVGISTNDSTGTFTVAHVSQPFLSLNTELVSNISGLPQRSTAKVTDQTF
VSSVKSLQKDHEQSSDDRKSDNSNPQSVLNSEFTASSACVNTSKTESPLLVSEDNQTVWY
EYGCV
NT seq
6138 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagatattcacacccctgttggagcagtttatatctagccctcttgtcact
tgggttaagacatttggacccttagctggaggaaatgggagcaacctggaggaatatgtg
gctctagtggatggcatattcttgaacgaagtcatgctccaaatcaaccctaaatccact
agtcagagagtaaataagaaagtcaacaatgatgcgtcacttaggattcaaaatttgtct
attttggtgagacaaataaaatcttattatcaggagactttgcagcagttgatcatgatg
tctttgccaaatgtcttaataattggcagaaatcctttttctgagccgggaactgaagaa
attaaaaaactacttttactcttacttggctgcgcagttcagtgccagaaaaaagaagaa
ttcattgaaagaatccaaggtttagattttgatacaagagcagctgttgctgcccacatt
caagaggtaactcataatcaggaaaatgtgtttgatctacagtggatggatgtcagcatt
ctgtcacaagaatatatcgaacctcttttgaaaaatatggcattacatttaaaaagactt
atagatgaaagagatgaacattctgagactatcgtagagctttctgaagaacgggactgt
cttcattttctacctcatgcatcagcagcacaatcaccttgtggatctccaggcattaaa
cacactgaaagcagacagcacttgtcagtggagctggcagatgctaaagcaaagataaga
agacttaggcaggagctggaggaaaaaactgagcagctgctagattgtaaacaagaactt
gaacagatggaagctgaactaaagagactgcagcaggagaatatgaatttgctttcggat
gctcgctctgccagagtgtaccgtgatgagttagacgtactccgtgagaaggcaatccga
gttgacaagcttgaaagtgaagtcagccgatacaaagagaggctgcatgatattgtattc
tacaaggctagagttgaggaattaaaagaagacaatcaagtattgttggaaacaaagaca
atgttggaagatcaactagaggggacccgagcccgttctgataaattacatgaactggaa
aaggaaaatctgcaattaaaagccaaactacatgatatggagatggagcgtgacatggac
agaaaaaaaatcgaggaactcatggaggaaaatatgactctagaaatggctcagaaacaa
agcatggatgaatcattacatcttgggtgggaacttgaacagatgaacagaactactgag
ctttctgaagtgccacgaaagtcacttggccatgaagtgaatgaactgacatcaagtaga
ttgctgaagctggaaatggaaaaccaaagtttgctgaagacggtggaagagctacaaaat
gtagtgggttctgtagaaggcagtaattcaaagattctgaaaatggaaaaagaaaaccaa
agacttagcaaaaagttggaaggacttgagaatgaaattaagcaagagaaacaaagtctt
cagaatagtcaaaatctgagcaaagatctgatgaaagaaaaagcaaaacttgaaaagacc
attgagactcttcgagaaaactcagagagacagattaaaatattggaacaggagaatgag
catttgaatcaaacattaggtgctctaaggcaacggtctcaaatcagtgctgaagcaaga
gtgaaagacattgaaaaagaaaataaaatcctccatgaatctatcagagaggccagcagt
aagctaaataagattgaatatgagaaaaagcaaatgaggaaagaactggaacattataaa
gagaaaggagaaagagcagaagagcttgagaatgtgttgcatcatcttgaaaaggagaat
gagttattacataaaaagattaccaatttaaaaattacttgtgagaagatagaagcctta
gagcaagaaaactcagacctggaagtggaaaacagaaagttgaaaaaaactctagatagc
tttaaaaaccttacttttcaattagaatcattggagaaagagaattcacaacttgatgaa
gaaaatttagaactaagaagaacagttgaatctttgaagtgtacaagcatcaagatggcc
caattacagttagaaaataaggaattggaaagtgaaaagaaacaacttaaaaaagggttg
gagcttatgaaagcttcatgtaagaaaacagaacgtttagaagtcagctaccaaggtttg
gatacagaaaaccaaaggctacagaaagcattagaaaatagtaccaaaaagattcaacaa
ttggaaagtgaactacaagatttagagtctgaaaaccaaactctgcaaaagaatctggaa
gaattaaaaatctctagtaaacgcctagagcaattagagaaggagaataagctgttggaa
caagagacttctcagctggaaaaggataagaaacaactagaaaaagagaataagagactt
cgacaacaagcagaaattaaagacagtactttagaagagaacaatataaaaattagtaat
ctggaaaaggaaaacaaatctctctgtaaagaaataggtatatttaaagagtcttgtgta
cgtctaaaagagctagaaaaagaaaataaagaacttgtgaaaagagctaccattgataag
aaaacacttgtcacattacgagaggatttggtgaatgaaaaactgaagacccaacaaatg
aataatgatcttgaaaaacttacgcatgagcttgaaaagataggtttaaataaagagcgc
ctcttgcatgatgaacagagcacagatgacagtaggtacaagcttttggagtcaaaatta
gagtctacactaaagaagtctctagaaataaaagaagaaaaaattgcggctttggaagct
cgtttagaagagtcaacaaatttaaaccagcagctgcgccaggaacttaaaacagtgaaa
aaaatctatgaagctctcaagcaaagacaagaggaggaaaggacggtacagaattctcct
ccaagaactggtgaagaaacccagtctgtcaataaatgggaaaaagaaaatcaggaaact
actagagaactattgaaggttaaagatagattaatagaagtagaaaggaataatgctacc
ctgcaggcagagaaacaagcactgaaaactcaactaaagcaacttgagacccagaacaat
aatctacaagctcagattctgtcacttcagagacagactgtttctttacaggagcaaaat
acaaccttacaaactcagaatgccaaacttcaggttgaaaattctacccttaattctcaa
agtacatctcttatgaatcagaatgcacaactgctgatccaacagtctgccttggaaaat
gaaaatgaatctatactcaaggaacgagaggatctgaagtcattgtatgattcactggtc
aaagatcatgaaaaactggaacatcttcatgagcgtcaagcttccgaatatgaatctcta
attgccaaacatggaagcctcaagtctgcacacaaaaatcttgaggtggaacataaggac
ttagaagataggtacaatcagttgctgaaacacaaagtgcagttagaggagttggaaaaa
ttgctcaaagtagaacaagagaaaatgttgctgcaaagcaaaaaacacaaaactgtagca
gcagaatacaaaaaactttgtgatgaaaatgataggctaaatcatacatacaatcaactt
ttaagagagaatgaagttcttcaaactgaccataagaatttgaaaagcttattgaacaat
tccaaactagaacaaacacgattagaagctgaattttctaaactgaaagaacagtaccaa
caactggatattacatctacaaaactgaataatcagtgtgagttgcttagccagcttaaa
ggaaatctggaggaagaaaacagacatctacttgatcaaattcagacattaatgctacag
aatagaacgttactggagcagaatatggaaagcaaggatcttttccacgttgaacagaga
cagtacattgacaagttaaatgaattgagacgacaaaaggagaaattagaggagaagatt
atggatcagtataaattttatgagccatctccccctagaagaaggggcaattggattact
ctaaaaatgaggaaattgataaaatctaagaaagatgttaaccgtgaacgtctgaagtct
ctgactcttacacctacccgttcggagtccagtgaaggatttcttcagctaccccatcag
gacagtcatgatagttcctctgtgggctcaaactctcttgaagatggccagacactggga
accaaaaagagcagtatgattgcattgaaaagactgccctttttgaggaacagaccgaag
gaaaaagacaaaatgaaggccatctaccgtcgctccatgtccatgaatgacctggtacag
tccatggtcctagcaggaggacaatggacaggtagttctgagcatctggagggccttgat
gatgtatctacgggtaaaaggaaaaaagaattgggagctatggccttctctactacagct
atcaactttgcaactgtcaactcttcttcaggcttcagatccaagcaattgctaaataat
aaagatactacatcctttgaagatgtaagtccacaaggcattagtgatgattctagtaca
ggatcaagagttcatgcttccagaccagccagccttgatagtggcagaacatccactagt
aatagcaataacaacgcttcacttcatgaagtcaaagcaggtggaattaacaaccaaagt
aggccacaaagtcacagcagtggagaatttagtctgcttcatgaacatgaggcttggtct
agcagcagcagcagtcccatccagtatttgaaaagtcacaccaaatcgagtcccatgatc
caggaaaaaatgcctgaaacagtggataatcaaggaaagcagaagatcaaaactggttct
cctggaagtgaggttgttactctgcagcagtttttagaagaaagcaacaaggttacttct
acagagataaagtgtgcaagccaagagaatcttttagatgaagtaatgaaaagtttgtct
gagtctgctgagttggcaggaaaagaaaagctaagcaaacagtcgtctgtcagcagtggt
atcgtcgagtcattaagtgtgaaaaatacagttgacttctcagatggaaggtcagctaaa
cctgaacagcttgtaaggcccagccctcgtaaaactgaagatacctactttaccagctct
tcaataaaattgatgtcaggtactcaaggaaaggtcaagtcaatcaaagaaaaagaacag
acaaatccatcacaacgacaatcaaaagattgcagcccttatgctaccttacctcgtgca
agcaatgtgatttctacagcagaaggaactactcgaaggacaagcattcatgatttttta
tctaaggacagtaggcagcctgtatcaattgatccagcaccatctacagctgatagaagc
attccatcagcatctagtgagtaccgtgcacaccagcagtcctctagtttttttcattat
acatcttacaatgtagattctattccacaaaatgatttagataatacaattaaaccagat
cactcgagatataaatctgagaagcctaggaattcaaggatgggaaaatcaaatgttgtt
gacaaaacttcgagcactaatgtgttcagtgataaagttggtatatcaactaatgatagc
acagggacatttactgtggcccatgtgtcacagccatttttatcccttaacactgaatta
gttagtaatataagtggattacctcaaaggtctacagctaaggtaactgatcagacattt
gtctcatcagttaaatctttacaaaaagatcatgaacagtcttctgatgaccgtaagtct
gataacagtaacccacagtcagttctaaatagtgaatttactgcttcttctgcatgtgta
aatactagcaagactgaatcccccttactggtttctgaagataaccaaactgtttggtat
gagtatggttgtgtatga
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integrated database retrieval system
