Chelonoidis abingdonii (Abingdon island giant tortoise): 116828125
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Entry
116828125 CDS
T07367
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cabi03016
]
116828125 (RTCB)
Enzymes [BR:
cabi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116828125 (RTCB)
Transfer RNA biogenesis [BR:
cabi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116828125 (RTCB)
Prokaryotic type
tRNA splicing ligases
116828125 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116828125
NCBI-ProteinID:
XP_032642034
Ensembl:
ENSCABG00000012852
UniProt:
A0A8C0H6P7
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLNKTSWRIRKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcaatacctggacaagctgaacaagaccagctgg
aggatcaggaagggcttcgtgcccaacatgaacgtggaaggagtattttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggcggaggtgctggt
ggattcttgccggccatgaaacagattgggaacgtggctgcgctacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgatccagacgcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaatctggatgaaagtgacgtccaacctgtgaag
gaacagctcgcccaagccatgtttgaccatattccagttggcgtgggctccaagggtgtc
atccccatgaatgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctcggagcaggaaaccattatgctgagatccaagtggtggatgacatttataacgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaaaggaatggcagcagctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtcatctatgatgtgtcgcataacattgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgaccagggct
ttccctcctcatcatcctctcattgctgttgattaccaactgactggtcagccagtactg
attggtggcacaatgggaacttgtagctatgttcttactggtactgaacaaggcatgacc
gagacctttggaaccacatgccatggagctggtcgtgcattgtcccgagcaaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgcaatccgt
gttgcttctcccaagctggtcatggaagaagcaccagaatcctataagaacgtgacagat
gtagttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatt
gctgttattaaaggctag
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