Chelonoidis abingdonii (Abingdon island giant tortoise): 116828811
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Entry
116828811 CDS
T07367
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cabi01001
]
116828811 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cabi04054
]
116828811 (CIITA)
Enzymes [BR:
cabi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116828811 (CIITA)
Protein kinases [BR:
cabi01001
]
Serine/threonine kinases: Other
TAF1 family
116828811 (CIITA)
Pattern recognition receptors [BR:
cabi04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116828811 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
NB-ARC
NPHP3_N
nSTAND_NTPase5
CARD
AAA_16
RsgA_GTPase
AAA_22
AAA_19
DUF87
Motif
Other DBs
NCBI-GeneID:
116828811
NCBI-ProteinID:
XP_032643168
Ensembl:
ENSCABG00000017685
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MNLFKEILPGIREILSSATTSDVHALLSCMLEKDVISKEYHQTLLQEKDREDLARKISLT
LVDKWDLCLNTLVPLRCLKLYTKMPQDITDNESSLDRGIAASKRQTMDSAVLTENSFLDL
LHSNIDPLHLYSLLDTRLSDEDEERELSTDPEIDTINHDQFSNLDVFYTMESNESVEESI
FSNAGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMANETTEGFTEMKKQKCQKRSF
VSTAESYSDASKPKCRRPDAAKRVTEQVCTEGSRAVGDVRPSCLKRVESPGSTVNGSFVA
EPLNSSPANSTSLSHLHMQFSVTSIHPTGKNVVMPVSSGNSNPDCLLVGAKGIQMISGFA
VLPQQIINLPIGNGASNIIIYPVSSSPTETLQISPAFSTTLAAQVDLAVQSILGSPDKNT
SIGPFAYMPETAAVTDLTDEEEMSNEISQIPVVPSEQIRKRPKPVEAFCTSLKDYFQDVC
KFMAMDREVTLDHLYIDGALMQGQTETKSGKNVIKVMEKELVIYNLEEKEKAAIERSQIF
QVLGGKELETKVIVVLGKAGMGKSILVQKICQDWSNGKFSQFEFVFWFECRRLSLPEKQY
SLKDLLLELFVKPREGSDEVFEYILQNPSKVLLIFDGFEELQDHDGFTHYPDCQSYKELY
SIRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGFSPQQVELYIARYFE
GLPYSDDAVKLITNCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDLPPTLTSLFVKYLQQ
KLIPTQTDATAIGNQQHVTRLAQLAWYLGEKNQNALKSSLFPSKEVKEFALKYGLVLPFT
FPKHSGNGEEEFGSAFSDFVIQNFLSALHLLLSEDIKDKSLTKYLSLPARKKKPHNWLDL
VPRFLPGLLYLRHDPFLCSLSDEHVMKMITKKQKTLLKYIKKIQISDLYPEKLLELLHCV
YETQDSYLLQHVALRIKAELSFLGTLLTPPDVYVLHFILKRSPKEFSLDLRNSGINLQGL
KHLVGLKNVTSFRTSLSDTVRLWESLEQTKEYELLKISVEKFDIDPFKAETMKDIRDLSD
LVQIQEKMTHCIEEAFGCNINEIPAIKNLRKLEFALGPTCGLQGFLKLVEILAAFPSLQH
L
NT seq
3425 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctggaatcagagaaattctctccagtgccacaact
tctgatgtccatgcattgctcagctgcatgttggagaaagatgttatatccaaggaatac
catcagaccttactccaggaaaaagacagagaagacctagcaaggaagatatctctaaca
cttgtggataaatgggacttgtgtttgaacaccttagttcctctccgttgtttaaaactg
tacactaagatgccacaagacatcacagataatgagtcatctctggacaggggtatagct
gctagcaaaagacaaaccatggattcggcagttttgacggaaaatagctttcttgatttg
ctgcacagcaatattgatccattgcatctatacagcctcttggatacaaggttatccgat
gaagatgaagaaagagaactttcaacagaccctgaaattgataccatcaaccatgatcag
ttcagcaatttggatgtcttttacacaatggaaagcaatgaaagtgtggaagaatctatt
ttttcaaatgcaggggaagcttattctagaatagctggattagcagaatatgtgctcaaa
gatcagcaggagagacagatggaagacatttttggaaaactcattttagatgaaatggcc
aatgaaactacagagggttttacagagatgaagaagcaaaaatgtcagaaacgatcattc
gtgagcactgcagagagttactctgatgcttccaagcccaaatgcaggagaccggatgca
gcaaagagggtgacagaacaagtatgtacagaaggcagcagagctgttggggatgtaaga
cctagctgcctgaaaagagtggagtcccccgggtctacagtgaatggcagttttgtagcg
gagcctctgaacagctctccagctaactccacctctttgtctcacctgcacatgcagttt
tctgttaccagtatacatccaactggaaaaaatgttgtgatgcccgtgtcttctggaaat
tccaacccagactgtctgcttgttggtgctaaagggatccaaatgatatccggctttgca
gttcttcctcagcagataattaatttgccgatagggaatggtgcatccaatattataata
tatccagtgtcctcctcccccactgaaacattacagatatcaccagctttctccacaacc
ctggctgctcaagtggacttggctgtccaaagcattttggggtctcctgacaaaaacacc
tccattggcccatttgcttatatgccagagactgcagctgtgactgatcttacagatgaa
gaagaaatgtccaatgagatatcacaaattcctgttgttccttctgaacaaattcgcaaa
agaccaaagccagtggaagctttctgcacatcacttaaggattattttcaagatgtgtgc
aagttcatggccatggaccgtgaagtaacccttgatcacctttacattgatggggctctc
atgcaaggtcaaactgaaacaaagagtggcaaaaatgtcatcaaggtgatggagaaggag
ctggtaatatacaatttagaagagaaggaaaaagcagctatagaaagaagccaaatattt
caagtcctaggagggaaagaactagagaccaaagtcattgtggtgttgggaaaggcagga
atgggtaaaagcattcttgttcaaaagatctgccaagactggtctaatggaaagttttct
cagtttgaatttgtcttttggtttgagtgtagacgactgagcctgcctgagaaacaatac
agcttgaaggacctgcttcttgagctctttgtcaaacctcgagagggaagcgatgaagtc
tttgaatacatactgcaaaatcccagcaaagtcctcctcatcttcgacggtttcgaagag
ttgcaggatcatgatggctttacacattacccagactgtcagtcttacaaggagctgtac
agcatcagggagctatttgcagggctcttccagaagaagattctcagtggctgtacttta
ttgctaacagcaagacccaaggacaaatttaatcagtatttatccaaagtggacaagatt
atcgaaatgatagggttctctccacagcaggtagaattatacatagccagatattttgaa
gggctaccgtacagtgatgacgcagtgaaattaatcacaaattgtcaatatctgttcagt
cactgctacagtcccgtcatgtgtagattcatttgttttctatgtgaaatgatgtttgaa
atgggagacaaagacctgcctccaacacttaccagcctctttgtaaaataccttcagcaa
aagctgatacctacacaaacagatgcgacagccataggaaatcaacagcacgttaccagg
ctagctcagttagcctggtatcttggagaaaagaatcaaaatgccctgaagagcagtctt
tttccctctaaagaagttaaggagtttgctctgaaatatggcttagtactgccatttacg
ttcccaaaacattcaggaaatggggaggaagaatttggaagtgcgttctcagacttcgtt
atccaaaattttctgagtgcgcttcatctgttgctctcagaagacatcaaggataaaagc
ctcacaaagtacctttccctaccagccaggaagaaaaagcctcataattggttagacctg
gtgcctcgattcttgcctgggttattgtacctccggcatgatccattcctctgctctctt
tcagatgagcatgtaatgaaaatgataaccaagaagcagaaaacgctcttaaaatatatt
aaaaaaatacagataagtgatctctatccagaaaaactacttgagctgctccactgtgtt
tatgaaacacaggacagctaccttttgcagcatgtggctttaaggatcaaggctgaactt
tcttttctgggcactcttcttacaccccctgatgtctatgttctgcattttattttaaaa
agatccccaaaggagttttccttggatttgcggaacagcggcattaacctacaagggctg
aaacacctggttggcctaaagaatgtgacatcattcaggacctcccttagtgacacagtc
aggctgtgggagtccttagagcaaacaaaggaatatgagctgctgaagatttcagttgag
aaatttgatattgatccctttaaggcagaaactatgaaggacatccgtgacctttctgac
cttgtacagatacaagagaaaatgacccactgcattgaagaggcatttggctgcaatatt
aatgaaattcctgctatcaaaaacctcagaaaactagaatttgcactgggtccaacctgt
ggccttcagggattcttaaagcttgttgaaattcttgcagcatttccatctctccaacac
ttaga
DBGET
integrated database retrieval system
