Chelonoidis abingdonii (Abingdon island giant tortoise): 116829341
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Entry
116829341 CDS
T07367
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
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Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
SH3_1
SH3_9
PDZ_6
PDZ
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
116829341
NCBI-ProteinID:
XP_074926666
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All DBs
Position
11:17512961..17564940
Genome browser
AA seq
1737 aa
AA seq
DB search
MPRSPGSSEEERVSEYPEGESDSESSRDGPPGASPGPLDRRTQGPPMSVPDDARFSMMVF
RIGIPDLHQTKCLRFNPDAAIWVAKQQILCTLNESLKDVLNYGLFQPATNGRDAKFLDEE
RLLRDYPQSFEKGVPYLEVPRPTPPGHKQLAKLHTKTGLKKFLEYVQHGAAEKVARLLDK
GLDPNYHDSDTGETPLTLAAQLEGTVDVIRLLCLGGAHIDFRARDGATALHRAVCTRRYA
ALTALLDLGGSPNYKDRRGLTPLYHTAMVGGDPRCCELLLYNQAHIGTMDENGWQEIHQA
CQHGHSQHLEHLLFYGAEPGAQNASGNTALHVCALYNKESCARILLYRGANKEIKNNSGQ
TPFQVAVIAGNFELGELIKNHREADMVPFQESPQYAARRRDGGRSLGVPHLLLRANSDTS
MNVPDWMLYGSPLAPPPPASVAMQAPKIATGTLRSASSPRGARTRSPSRGRHPEDGKRQQ
RGRPSSSGFPRDSAAGGTLNSRGMKRKLYSAVPGRTFMAMKPYQAQAEGELSLSKGEKIK
VLSVGEGGFWEGQVKGRVGWFPSDCVEEVQTKTQDGKQESRSDKAKRLFRHYTVGSYDSF
DAPSDYIIKEKTVLLQKKDNEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVA
WRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNNLMVKVVMVTRNPEMEEAMRKKAA
PQQTKRLPPPAISLRSKSMTSELEEMVSPWKKRSDKLDEILAAAQQTISVGEGPSSSGLP
SLGKARGPKGYFTSESNFEPHRMGQPSYERPSYLPPGAPQGLMLRQKSIGRLTPAVRSTF
NPAAEAKLYPASLQQEPPAFEGPARREKLAMYRQELERGAEVGPSRGWRGHHPHPELRYY
NLPARAASAAMYVPAKPLRRKGPLVKQTKVEDEQRQQGAAPQTQPPPTLPAPAPPAPEKN
SIAIPTIVIKAPSTSSSGRSSQGSSMEAEGQPEPAPVPALPLHNSMDFTSQFGAALVGAA
RRDREWHSEARRRSALFLSTEVPEDEAPEPAPVPRLRHSKSIDEGMFSAEPYLQLNYAQP
LPPGTYYQPRPAKGYGGTSTTSAFTTVCSSFLPQLQPRPGGGNAPPLIHPLTGKILDPGS
PLGLALVARERALQESHSQQLQQGRAEAEERRSRPSSPRFGEVAPEPSGGGGSILRLWGA
PAGEPRPESPRRQAPSEPKGGPWAGEKRGEEGAGGEKLHVRFVENCRPQEESEPVPVQGV
EENGLPLLVLPPPAPSVDVDDEFLFTEPLPPPLEFSNSFEKPDSPKAGREPPAIPTLEPP
PAPPPPTTTALDSTTSSLTSYDSEVATLTQGGAPEPREAPHVNFSSVVSSIQIPAPEPPE
AVTDSGIEEIDSRSSSDHHLETISSVSTLSSMSGLSSEGVELLDSYVTYLDGQAFGGPAE
KPSKLRSRPFPARRDPATPTSSTISVAACAESVFALTPAPAQEPPAPQRRSPTLPWEEGG
AAKPSPVSAMKASIISELSSKLQQMSGVSWARPPDGAGPFGADRPGSLQRQRLPEDVSGP
SKPPGSLFHNWPKVGPGAKPPKSVEFDIRPALRRAPSPAALPSEHKISLAPRPSSLPILP
SVPLYGGIYDLRGSPPSGPCPFPDFVSGSRSLSPTHFLPPATDKPFGAKPLPFWTKFDVA
DWLEYLKLGEHRERFLDNEIDGSHLPSLTKEDYIDLGVTRVGHRMNIDRALKLFLER
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgccccggagccctgggtccagcgaggaggaaagggtctcggagtatcccgagggggag
tcggactccgaaagctcccgcgacggcccccctggcgctagtcctggccccctggaccgc
aggacccaggggcctcccatgtcggtgcccgacgacgcccgcttcagtatgatggtcttt
cggatcggcatccccgacctgcaccagacgaaatgcctgcggttcaaccctgacgcggcc
atctgggtggccaagcagcagatcctgtgcactctgaacgagagcctgaaggacgtgctg
aactacgggctcttccagccggccaccaacgggcgggacgccaagttcctcgacgaggag
cggctgctgcgtgactacccccagagcttcgagaaaggcgtgccctacctcgaggtgccc
cgccccaccccaccggggcataagcagctggcgaaattgcacacaaagactggcctgaag
aagttcctggagtatgtgcagcacggggcagcggagaaggtggcacggcttctggataag
ggcctagaccccaactaccacgactcagacacaggggagacccccctgacgctggcagcc
cagctagaggggactgtcgacgtgatccggctgctctgcctcgggggtgcgcacattgat
ttccgggcacgggatggagccaccgcgctgcaccgggcagtgtgcacccggcgctacgcg
gccctgacggcgttgctggaccttgggggctcccccaactacaaggaccgtcggggcctc
acccccctgtaccacacagctatggtggggggtgacccacgctgctgcgagctgctgctc
tacaaccaagcccacattggcaccatggatgagaacggctggcaggagatccaccaggcc
tgccagcacgggcactcccagcatctggaacatctgctcttctatggggccgagccggga
gcccagaacgcctctgggaacacagcgctgcacgtttgtgccctctacaacaaggaaagc
tgcgcccggatcctgctctaccggggggccaacaaagagattaagaacaacagtggccag
acgcctttccaggtggctgtgattgctgggaactttgaactgggggagctgatcaagaac
caccgggaagctgacatggtcccgttccaggagtccccgcagtatgcagctcggcgccga
gacggggggcgcagtctgggggtcccccacctcctcctccgggccaacagtgacaccagc
atgaacgtgccagactggatgctgtacggttcccctcttgcacccccaccgccggcctcg
gtggccatgcaggccccaaagatcgccacggggaccctgcgcagcgccagcagccctcgc
ggcgcccgcacccgctccccctcccgggggcgccaccctgaggatggcaagaggcagcag
cgtggacgccccagttctagtggtttccccagggactcggcagcgggtgggaccttgaac
agccggggaatgaagcggaagctttactcagccgtgcccggccgaaccttcatggccatg
aaaccctaccaggcccaggcagagggcgagctgtccctcagcaagggcgagaagatcaag
gtgctgagcgtgggcgaaggcgggttctgggaggggcaggtgaagggccgggtcggctgg
ttcccctcggactgcgtggaggaggtgcagaccaagacgcaggatggaaagcaagagagc
cggagtgacaaggccaagcgcctcttccgacactacacggtggggtcctacgacagcttc
gacgcccccagtgactacatcattaaggagaagacggttttgctgcagaagaaggacaac
gaggggtttggtttcgtcctgcgtggagccaaggcgcagacccccatcgaagagttcacg
cccaccccggccttccccgccctgcagtacctggaatccgtggatgaggggggcgtggcc
tggcgcgctggcctccgcatgggggacttcctgatcgaggtcaacgggcagaacgtggtg
aaggtcgggcaccgacaggttgtgaacatgattcgccaggggggcaacaacctgatggtg
aaggtcgtcatggtaaccaggaaccctgagatggaagaggccatgagaaagaaagcggct
ccccagcagacgaaacgactgccccccccagccatctccctgcgctccaaatccatgacc
tctgagctggaggagatggtctccccctggaagaagaggagtgacaagctggacgagatc
ctggctgcagctcagcagacgatcagcgtgggggagggacccagctccagtgggctcccc
tccctggggaaggcccgggggcccaagggctacttcacctctgagtcaaacttcgagcca
catcggatggggcagcccagttacgagcgcccgtcgtatctgccccctggtgccccccag
ggcctcatgctgcgccagaaatccatcggccgcctcacccccgccgtgcgctccaccttc
aacccggccgctgaggccaagctctacccggcctcgctgcagcaggagccgcctgccttc
gagggcccggcccggcgcgagaagctggccatgtaccgccaggagctggagcgtggggcc
gaagtcgggccctcccggggctggcgcgggcaccatccgcacccggagctgcgttactac
aacctgccggcccgggcggccagcgccgccatgtacgtcccggccaagccactgcgccgg
aaaggcccactggtgaagcagaccaaggtggaggatgagcagaggcagcaaggggctgcc
ccccagactcagccgcccccgacgctgcccgccccggcgccacccgcccccgagaagaac
tccatcgccatccccaccatcgtcatcaaagccccctccaccagcagcagcgggcgcagc
agccagggtagcagcatggaggctgaggggcagccggagccggccccggtgcccgccctg
cccctccacaacagcatggacttcaccagccagttcggcgcggccctggtgggggcggca
cggcgggaccgggagtggcacagcgaagcccgccgccgctccgccctcttcctctccacc
gaggtgccagaggacgaggcgcccgagccggctccagtgccccggctccggcactcgaag
agcatcgacgagggcatgttctcggctgagccctacctgcagctgaattacgcccagccc
ctgccgccgggcacctattaccagccacgccctgccaagggctatgggggcaccagcacc
accagcgccttcaccaccgtctgctccagcttcctgccccagcttcagccccggccgggc
ggcgggaatgccccgcccctcatccaccccctgacgggcaagatcctggacccaggctcg
cccctgggcctggcgctggtggcacgggagcgggcgctgcaggaatcgcactcccagcag
ctgcagcaaggccgggcagaggcagaggagcgaaggtctcgcccatcctcgccccggttt
ggggaggtggcgccggagccctctggaggaggcggctccatcctgcgcctgtggggggca
ccggcaggcgagccgcggccggagagcccccggcgccaggccccctccgagcccaagggc
ggcccgtgggcgggggagaagcggggggaggagggggccgggggcgagaagctgcacgtg
cgctttgtggagaactgccggccccaggaggaaagcgagccggtgccagtccagggggtg
gaggagaacgggctgcccctgctggtcctcccgccgccggctccctccgtcgacgtggac
gacgagttcctcttcaccgagccgctgcccccgccgctggagttctccaacagcttcgag
aagcccgactcccccaaggcgggccgggagccccccgccatccccaccctggagccgccg
cccgccccgccgccgcccaccaccactgccctggactcgaccacctccagcctgacctcc
tacgacagtgaggtggccacgctgacccagggtggggcgcccgagcctcgggaggccccc
cacgtcaacttctcctcggtggtgtcctccatccagatcccggcgccggagccccccgaa
gcggtgaccgactcgggcatcgaggagatcgacagccggagcagcagcgaccaccacctg
gagaccatcagctccgtctccaccctgtccagcatgtcggggctgtccagcgagggggtg
gagctgctggacagttacgtcacctacctggacggccaagccttcgggggcccggcggag
aagcccagcaagctgcggtcccggcccttccccgcccgccgcgaccccgccacccctact
agctccaccatctcggtggcggcctgtgccgagagcgtcttcgccctcacgcccgctccg
gcccaggagccgcctgccccgcagcgccgctcgcccaccctgccctgggaggagggtggg
gcggccaagccctcgcccgtctcggccatgaaagccagcatcatcagcgagctgagctcc
aagctgcagcagatgagcggggtgtcgtgggcccggccccccgacggcgcaggccccttc
ggcgccgaccggcccggctccctgcagcgccaaaggcttcccgaggacgtgtcgggcccc
tccaagccgcccggcagcctgttccacaactggcccaaggtggggccgggcgccaagccc
ccgaagagcgtggagttcgacatccgcccggcgctgcgccgcgcccccagccccgccgcc
ctgcccagcgagcacaagatcagcctggcccctcggccctcctccctgcccatcctgccc
tccgtccccctctacggcggcatctacgacctgcgcggatcccccccctccggcccctgc
cccttccccgacttcgtctccggcagccgctccctctcgcccacccacttcctgcccccg
gccacggacaagcccttcggcgccaagcccctgcccttctggaccaaattcgatgtggcc
gactggctggagtacctgaagctgggcgagcaccgcgagcgcttcctggacaacgagatc
gacggctcccacctgccctcgctcaccaaggaggattacatcgacctgggcgtcacccgg
gtcgggcaccgaatgaacattgaccgcgccctcaagctcttcctggagaggtga
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