Chelonoidis abingdonii (Abingdon island giant tortoise): 116829396
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Entry
116829396 CDS
T07367
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04510
Focal adhesion
cabi04512
ECM-receptor interaction
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116829396 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116829396 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116829396 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cabi04147
]
116829396 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116829396 (COL4A5)
Exosome [BR:
cabi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116829396 (COL4A5)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116829396 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116829396
NCBI-ProteinID:
XP_032644088
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MKLRRCRRLAAACLVLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGESGFPGLEGQPG
LPGFPGPEGPPGPRGVKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLPGQKGEPGFPGLPG
LQGPPGPLGAQGPIGPPGPPGLTGPPGPKGLPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPNDVEFQKGDQGIPGERGPPGPPGPVGPPGPPGGMKGEKGEQGEPGKRGKP
GKDGDPGQPGRDGLPGEPGLNGVPGRDGEKGLKGERGLPGPPGVITGNGAEVGPKGSKGL
PGFPGPKGERGYPGLAGSPGLPGPPGIASIGPPGPPGLPGERGQKGIQGLPGVSIPGQPG
LDGQPGPPGQPGAPGPPGTTIPPSDRVCQRGPPGFPGPPGDKGFMGERGQKGDKGETCFN
CIGTGISGPPGDRGPPGPPGSPGSRGFPGPKGEKGLTGSTGLVGPPGFPGPPGPPGLPGS
KGDPGDSLAFPGLKGDKGDTGFPGPPGLPGIDGSPGREGLPGLPGPKGEPGGVAFKGRMG
PPGDPGVQGLPGDRGPMGPPGFGPQGPPGEKGIQGVSGRPGPPGVPGPKGEPGKTITEPG
VPGSPGPPGRNGEVGLPGDPGLPGQPGLPGISGPKGDPGIPGIGLPGPPGLKGFPGMAGP
PGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGAQGLKGDPGFPGNP
GLPGRPGSDGIPGPKGDPGPGGPPGLAGPPGFPGIGGQGPPGQPGPPGPVGPPGPPGLQG
VPGEKGDPGPPGFDIPGPPGDRGSPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGEMGV
MGAPGPQGPPGTPGRDGLPGPKGSDGLPGQPGPTGLAGQKGVKGETGLPGPPGQVDPSKL
GSKGEKGEPGIPGIPGVSGQKGYQGLQGDPGPPGFNGQPGAPGLPGPKGEPGLPGQSGPA
GPPGQKGAMGETGLPGVPGIKGSQGTAGRLGQPGPPGFPGLKGEKGNPGLSAIGVPGPKG
DTGFPGYPGNPGSKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPGSPG
LPGSPGPPGGGGRPGPPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQ
KGEMGLPGPPGSPGLTGFKGERGFQGFPGLQGPQGPPGLPGPPMEGPKGSPGPQGVPGRP
GPSGPPGLPGPEGPRGPPGNGGFKGEKGNLGQPGQPGLPGLKGDQGQPGRQGDPGRPGLN
GMKGDPGVPGVPGFPGMKGPIGPPGAIGFKGDQGLSGPPGPPGLPGPAGKTIVVKGDPGP
PGPPGQPGLKGPPGLSGPPGVPGPVGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQGT
QGSPGPDGLQGPPGPPGTPSVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSI
QPFISRCAVCEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTRISR
CQVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcggcgctgccgccgcctggctgccgcctgcctggtgctgctggggctctgg
gggctgagcgcagaggctgcggcttgccatggatgtacatcaggatccaaatgtgactgt
agtggagtaaaaggcgaaaagggcgagagcgggttcccagggttagaaggtcagcccggt
ttacctgggtttccgggaccagagggacctcctggcccacgaggagtaaagggtgatgat
ggccttccagggcctaccgggcccaaaggaatcagaggacctccaggtctgccaggattt
ccaggaactccaggacttcctgggttaccagggcaggatgggccaccaggacttcaaggt
atccccggatgcaacggaacaaagggggaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtcctcctggacctcctggtctaccaggtatgaagggtgatccgggtgaa
ataattttgtcatcactgccaggccagaaaggtgagccaggatttccaggacttccaggg
ttacaaggcccacctggtcccttgggcgcacaaggtcctattggtccccctgggccacca
ggtttaacgggacctcctggtccaaaagggcttccagggcctaagggcaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacctccagggcca
ccaggacaaattggggagcagaagagaccaaacgacgtagagtttcagaaaggagatcag
ggtattccaggagaacgaggtccaccaggaccccctgggccagtaggtcctcctggtcct
ccaggtggcatgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagagggaaaccc
ggcaaagatggagatcctggccagcccggtagggatggtttacctggcgagcctggttta
aatggtgttccaggaagagatggtgaaaagggtctgaaaggtgaacgtggtctgcctggt
cctcctggagttatcacgggaaatggtgcagaagtgggaccaaaagggagcaaaggactt
ccaggatttccaggacccaaaggcgagcgtggatatcctggcttggcagggtctcccggc
ttgccagggcctccagggattgcaagtataggcccacctggtccccctggtttgcctggg
gagcgaggacagaagggtattcaaggtctacccggagtttccatacctggacagcctgga
cttgatggacagccagggccacctggacagccaggtgcccctggacctcccggaacaact
atccctcctagtgacagagtatgtcagcgagggcctccaggttttccaggacctccagga
gacaaaggttttatgggggagcgaggccagaaaggtgataagggagagacgtgctttaat
tgtataggaactggcatttctgggcctcctggggacaggggaccacccggacctccaggt
agcccaggatctcgtggtttcccaggaccaaaaggtgaaaaagggctaactggctcaacc
gggctggtggggccaccaggatttccaggacctccaggtccgcctgggcttcctggttct
aaaggggaccccggggacagcctagctttcccaggattgaaaggtgataaaggggacact
ggtttcccaggacctcctggtcttcctggcatagatggctctcctggacgagaaggactg
ccaggtcttcctggtcccaagggggaacctggtggtgttgctttcaaaggaagaatggga
cctccaggtgatccaggagtgcaaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggtcctccaggtgaaaaaggcattcagggtgtatctggtcgtcca
ggtcccccaggagttccaggtccgaaaggtgaacctggcaaaactattacagaaccagga
gttccaggctcccctggacctccaggaagaaatggtgaagtaggacttccaggtgatcct
ggtctgccaggtcagccgggcttgccaggcatctcaggtcctaagggtgatccgggtata
cctggcattggacttccaggcccaccaggcctaaaaggtttcccaggaatggctggcccc
ccaggagcaccaggagcccctggacgaccagggctcgaagggccaccaggacaatctggt
ttcccaggacaaaagggggaccctggatttggtgtcccaggaccacctgggccaccaggg
ccaccaggttttaaaggagctcagggactgaaaggtgatcctggcttcccaggaaacccc
ggtttgccagggcggccaggttcagatggaattcctgggccaaaaggtgaccctggacca
ggcggaccacctgggttagcgggacccccagggttcccgggaattggtggtcaaggtcca
cccggacagcctggccctccaggacctgtgggcccaccaggtccaccaggattacaagga
gttccaggtgagaaaggagatcctggccctcctggattcgacatccctggtccacctggt
gacagaggtagtccaggatttccaggaacaccaggtctcattgggcctccaggttcacca
ggaccacctggacgagatggaatatcaggatttccaggtgccaaaggtgagatgggtgtg
atgggagctccgggtccacaaggtcctcctggaactcctggcagagatggccttcctggt
cctaaaggcagtgatggtttaccaggtcagccaggacctactggactggcagggcagaaa
ggcgtgaaaggtgaaacaggcctgccaggtccccctggacaagttgatccaagcaagctg
ggatcaaaaggagagaaaggcgagccaggcattccaggtattcctggagtatcaggccag
aaaggttatcaaggtctccaaggtgacccagggccacctggattcaatgggcaaccaggt
gcaccaggattgccaggccccaagggagagccagggcttcctgggcagtcaggaccagca
ggacctccaggacaaaaaggtgccatgggagagacagggcttccaggtgtcccaggtatt
aaaggctctcaaggtacagccgggcgtcttggccagcctggccctccaggatttccagga
ttaaagggagagaaaggcaacccaggtctttcagctattggagtccctggccctaagggt
gacactggtttccctggatacccaggtaaccctggcagcaaaggtacacctggaaatcct
ggtttggctggattaccaggtaatccaggtgcaaaaggagaagcaggccttcctggattc
ccagggacaccaggaattccaggaccaaaaggtattgatggacccccaggtagtcccggt
cttcctggatcacctgggccaccaggtggtggtggccgtcccggccccccgggtcttcca
ggggagaaagggcagccaggtcgggatggtattcctggaccagctggacagaagggtgaa
ccaggtcaaccaggttttgggcgcccaggacctcctggtctcccaggattatcagggcaa
aaaggcgagatgggattacctggccctccaggatccccaggacttacaggtttcaagggt
gaaagaggtttccagggattccccggtctacaaggtccacaaggtccaccaggcctgcct
gggccacctatggaaggtcctaaaggtagtcctggtccacaaggtgtaccagggagacca
ggtccttcaggtcctccaggtctgccagggccagaaggtccacggggtccccctggaaat
ggaggatttaaaggagaaaaaggaaacctaggtcagccaggccagcctggcctccctggt
ctaaaaggagatcaaggacaacctggacgccagggtgatcctggtcgtcccggcctgaat
ggaatgaaaggtgatcctggggttccaggtgttccaggatttccaggtatgaagggtccg
attgggcctccaggagcaattggttttaaaggtgatcaaggtctgtcaggtccaccaggt
ccaccaggcttacctggccctgctggaaaaaccattgtagtaaaaggtgacccgggtcct
ccaggtccaccaggccagccgggattgaaagggccacctggattgtcaggcccaccaggt
gtgccaggtccagtaggccttcctggggatcctgggcgagatggacttcctgggtttgat
ggtccgggaggacgcaaaggcgagagaggacttccaggccaaccaggctttcagggtacg
cagggatcccctggtcctgatggcttgcaaggcccaccaggtcctcctggaacaccttct
gttgctcatggattccttataactcgacacagccagactacagacacaccattgtgtcca
caaggaacgataaggatatacgatggattttctcttctatacgtgcagggaaatgagaga
gcccatggccaggacttaggtactgctgggagctgtctccgacgtttcagcaccatgccc
ttcatgttctgtaacatcaacaatgtgtgtaattttgcatcaagaaatgattattcctat
tggctgtccactccaaaaccaatgccaatgagcatggagccactgactgggcagagcatt
cagccattcattagccgatgtgccgtgtgtgaagctcctgccatggttatagctgtccat
agtcagaccattcaaattccatcatgtccgcaaggttgggactctctttggattggttat
tctttcatgatgcacactagtgctggtgcagagggctctggacaggccttggcatccccc
ggttcctgtttagaagaattccgctcagctccttttattgagtgtcatggtcgtggtact
tgtaattactacgctaattcatacagtttctggctggcaactgtagagatatcagaaatg
tttagtaaacctcagtcagagacactgaaagctggagacctgaggacacgtattagtcgt
tgtcaagtttgtatgaagaggacgtaa
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integrated database retrieval system
