KEGG   Chelonoidis abingdonii (Abingdon island giant tortoise): 116829410
Entry
116829410         CDS       T07367                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04382  Cornified envelope formation
cabi04510  Focal adhesion
cabi04512  ECM-receptor interaction
cabi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cabi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116829410 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116829410 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116829410 (COL4A6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    116829410 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cabi04147]
    116829410 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:cabi00536]
    116829410 (COL4A6)
Exosome [BR:cabi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   116829410 (COL4A6)
Glycosaminoglycan binding proteins [BR:cabi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116829410 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 116829410
NCBI-ProteinID: XP_032644120
LinkDB
Position
Unknown
AA seq 1680 aa
MRTGLVVLVAFCLAVELVLGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGPIGNQGPI
GAPGFMGQEGLAGAKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPASRPRFSCL
MAAMVLLGVLVFHGWMDFLYTGAGRFGPKVQGERRYAEGAKGSKGDSGLPGLDGISGPKG
FPGPAGSVGPIGLPGLQGPPGAVGPQGPKGNMGLGFQGEKGEKGDVGPAGPAGPPPSTGI
LEFMGFPKGKPGVKGEPGPKGFPGSKGLPGLLGIGGIGEKGEKGIPGLPGGRGFLGLDGS
DGIPGRKGQFGFPGFPGLDGVQGMKGELGEMGPPGPLISLDGEDRLVSGVPGDPGTPGTP
GPRGDEGIAGSPGLPGTPGLSALVQGPPGPMGFPGIPGTTGEPGDQGRATIGLPGTPGIN
GLLGMPGPPGLPGPSPEEILNGEPGEPGRPGQRGTPGVLGLKGTKGDPGDCACDGGATRA
GPKGAPGPLGPPGSPGEPGFKGSSGDPGTVGAQGPQGPPALPGQPGSPGLKGEKGNPSFA
RGRGLQGDPGAIGARGPSGIPGTPGRDGFPGLPGRPGPPGDGGLGFPGEKGLPGLPGSKG
RRGESGLPGIGFPGPSGVRGPAGDPGMDGFPGQPGLPGPSGITLPCEVPGAFGAPGPPGM
PGFPGPKGSLGFPGIPGQPGLSGSKGQPGIPGSVGLPGAPGFPGPRGELGPQGLPGLDGA
DGFPGKMGAPGLSGAKGAPGGVFGAERGVLGEPGRPGFRGDKGLPGEPGFPGQEGVDGRP
GSPGFKGQQGNPGLPGILGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLPGVKGRTGDA
GPAGPAGMKGFPGLEGFPGPPGDRGFLGSPGPLGRDGRPGFSGAKGEKGPPGLIGFPGLP
GLPGIPGVSGLKGLPGSAGREGNIGYSGPTGLKGDRGDRGPPGLPVLRPPELALALKGDK
GDPGSAGLRGFPGPRGEKGFPGTRGQPGLPGSRGLPATDRGLPGDAGFPGLPGPPGLPGQ
KGLAGIIGLPGFPGESGSEGISGAPGFPGTGGFPGPKGDPGESLGISGGLGNKGERGDRG
FPGERGKDGPKGEPGYPGNTGMDRPKGIPGDLGREGPPGLPGIAGLRGNAGLPGSPGQPG
PVGFIGLPGRAGPKGFPGFPGLNGLNGLQGTKGSPGTPGLSEVGLNGPAGLPGPKGEEGS
PGIGLGAPGLPGQKGSSGDTGPPGSLGLPGLPGLPGISLLSNIPGRHGDPGRPGVDGNPG
PPGPPGPQGLSGPASNQGDTGLPGRPGVPGLPGINGDMGLPGPPGIPGASGLKGVKAEPG
FMGMPGKDGLPGDPGIPGLKGETGSRGFSGPPGAPGLVPKPEEVIVPPGLPGLPGIDGVP
GYAGDRGFQGPDGQQGPKGLSGRSGQVGHPGLPGPDGAVGDPGTPGIPGPPGLEGVSGKP
GPFGLPGMPGRGVGVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAHNQDLGF
AGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPPYISRCSVC
EAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRAT
PFIECNGARGTCHYFANKYSFWLTTVERTQQFVSAPQSETLKAGQLRTRVSRCQVCMKNL
NT seq 5043 nt   +upstreamnt  +downstreamnt
atgcgcacagggcttgttgttctggttgctttctgcctagctgtggaactggtgcttggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagaaaaaggtgctcggggtcgaccgggacctattgggaaccaaggacctata
ggtgctccaggatttatggggcaagaaggtttggcaggggcaaaaggtgagagaggcgca
gtgggctctccaggatctgctggactgaaaggagataagggtccaatgggagttcctgga
tttcaaggcatcaatgggattccgggccaccctgccagcaggccaaggttttcctgcctg
atggctgcaatggttctattgggagtcctggtgtttcatggttggatggatttcctgtac
accggggcaggtcgctttggtccaaaggtccaaggagaacgccgttatgctgaaggcgct
aaaggaagtaagggtgacagtggtcttcctggattggatgggatttctggtccaaaaggt
ttccctggcccagcaggttccgtgggtcctataggattgccaggtttgcaggggccacct
ggtgcagtggggccacaaggaccaaaaggtaatatgggattaggtttccaaggagagaaa
ggtgaaaagggagatgtcgggccagctggccctgcaggtcccccaccatccactgggata
ctagagttcatgggatttccaaaagggaaaccaggagtaaagggtgagccaggccctaaa
ggattccctgggagtaaaggattacctggccttctgggcattgggggtattggagaaaaa
ggagaaaaggggatccctggcttaccaggtggcaggggatttctgggattggatggatct
gatgggattccagggagaaagggtcagtttggtttcccaggttttcctgggctggatgga
gtgcaaggaatgaagggtgaattaggtgaaatgggtcctccaggccctcttatttctctt
gatggagaagacagactggtctcaggtgtaccaggagatcctggaactccagggactcca
ggccctcgaggagatgaagggattgccggttcaccaggccttcctggcactccaggtctc
tcagctcttgttcaagggccaccaggtcccatgggatttccaggtattccaggtactact
ggtgaaccaggagaccaagggagagcaacaattggattaccaggcactccgggaataaat
ggtttactgggtatgccaggacctccaggactgcctggtccatcacctgaagaaatcctc
aatggagaacctggggaaccaggaagacctggacaacgggggacaccaggagttttggga
ctaaaggggaccaaaggggatccaggtgattgtgcttgtgatggaggagccactagagct
ggacctaaaggtgcaccaggccctctgggtccaccaggaagtcctggtgaacctgggttt
aagggttccagtggagatccaggcactgtgggtgcacaagggccgcaagggcctccagct
ttacctggtcaaccaggttctccaggccttaaaggagaaaaagggaatccatcttttgca
agaggcagaggtctccagggggatcctggtgcaataggagccagagggccttctggtatc
ccaggaactcctggcagagatggattcccaggtttaccaggccggccaggtcctccgggt
gatggtggactaggctttccaggcgaaaaaggcctgccaggattacctggctccaagggc
cggcgtggggagagtggtcttcctggcattggtttcccaggtcctagcggagttcgtggc
cctgcaggtgacccaggaatggatggttttccaggacaaccaggtcttccaggaccttca
gggatcaccttgccctgtgaagttcctggagcatttggtgcacctgggcctccaggcatg
ccaggatttccaggtcccaagggcagcctcgggtttccaggcattccaggtcaacctgga
ttaagtgggtcaaaaggacaaccaggtattccaggatcagtgggattgccaggagcacca
ggctttcctgggcctcgtggagaactgggaccacaagggcttccaggacttgatggagca
gatggtttccctggaaagatgggagctcctggcttgtcaggggcaaaaggcgctcctgga
ggagtgtttggtgctgaaagaggagtcctgggtgagcctggcagacctggattcagagga
gataaagggcttcctggagaacctggatttcctggacaggagggtgttgacggaaggcct
ggctcaccaggttttaaaggccaacagggtaatccaggactcccaggtattcttggattg
cgaggacctcctggtcctggaggtccgtttggcattaaaggcgaaccaggtcccagggga
gcagttggcttctcaggatcaccaggacttcctggagtcaaaggacgaacaggcgatgca
ggtccagcgggccctgctggtatgaaaggcttcccaggcctagaaggttttccaggacca
cctggggacagaggattcctagggtcacctgggcctttgggtagagatggacgtccaggt
ttctctggagcaaaaggtgaaaagggtcctcctgggttgattggctttcctggcctgcca
ggcctgcctggtatccctggggtgagtgggctgaaaggacttcctgggtcagctggaagg
gaaggaaatattggatattctggacccactggtctaaaaggtgacagaggagatcgaggt
cctcctggactcccagttcttaggcctccagaattggcattggcattgaagggagacaaa
ggtgatcctgggtcagctggactgagaggattccctggacctagaggtgagaaaggattc
cctggaacccgtggacaacctggtcttcctggttcccgaggtttgccagccacagataga
ggactacctggtgatgcagggttcccaggcctgcctggaccgcctggcttgccgggacag
aaaggactggctggaatcataggattacccggatttccaggagaaagtggttcagaaggt
atctcgggagcaccagggtttccagggactggtggtttccctggtccaaagggtgaccca
ggggaatcacttggaatttctggtgggttaggaaataagggagaacgaggggaccgtgga
ttcccaggtgagaggggaaaagatgggccaaagggtgaaccaggatacccaggaaacact
ggcatggataggcctaaaggtatcccaggtgacctgggccgagaaggaccaccaggcctc
cctggaattgctgggttgcgaggaaatgcaggtcttccaggttctccagggcagcctgga
cctgtaggattcatcgggctccctgggagagcagggccaaaaggattccctggatttcct
ggtttaaatggtctgaatggcttgcagggcacaaaagggtcacctggaacaccaggtctg
agtgaagttggactgaacggccctgcagggcttccaggtcctaagggtgaagaaggttcc
ccgggcattggcctaggagccccaggactccctgggcagaaaggatcatcaggagacacg
ggtcctccaggttctttgggtctgcctggtttaccagggcttcctggcatctctcttctt
tcaaatatacctgggagacacggtgatcctggccgtcctggagtggatgggaatccaggt
cccccaggtcctccaggtcctcaagggctctctggcccagcctccaatcaaggtgatact
ggccttccaggtcgccctggagttcctggtttgccaggcataaacggtgacatgggactc
cccggtccacctggaattccaggagcatcaggactcaaaggtgtaaaggctgagccaggc
tttatggggatgccaggtaaagatgggcttccaggggaccctggaattcctgggctgaaa
ggtgaaactggtagccgaggtttctcgggcccaccaggcgctccaggcctagtaccaaaa
ccagaagaagtcatagttcctccagggctacctggtctgccaggaattgatggtgtccct
ggctatgctggagatcgtggatttcagggaccagatggacagcaaggtccaaaaggtctg
tcaggcagatcaggtcaggtgggacatcctggtttaccggggccagatggcgcagtgggg
gatccaggaaccccaggtattccaggaccaccaggattggaaggtgtctctggaaagcca
ggcccatttggtttgcctggaatgccaggtcgcggtgtaggcgttggatacactttggtg
aagcacagccagtcagagcagattccgccatgcccaattggaatgaataagctctgggag
gggtacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccaggatctcggtttt
gctggctcctgcttgcctcgcttcagcaccatgccatttatttactgcaacatctatgag
gtgtgctactatgccagccgaaatgacaaatcctactggctctccaccactgctcccatc
cccatgatgccagtgagccgtctggagatcccaccttacatcagccgttgctcggtgtgt
gaagcaccttcccaggctattgcagtacatagccaggacattaccatcccacagtgccct
gagggctggcgcagcctatggattggatactctttcctaatgcacactgcagctggcgca
gaaggcggaggtcagtcccttgtctcacccggctcttgccttgaggatttccgtgccact
cctttcattgaatgcaatggtgccagaggaacctgccattacttcgcaaacaaatacagc
ttctggctgacgacagtcgaacgcacgcagcagtttgtcagtgctcctcagtcagaaact
ctgaaagcaggacagctccgaacacgagtcagccgttgccaagtgtgcatgaagaacttg
tag

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