Chelonoidis abingdonii (Abingdon island giant tortoise): 116829454
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Entry
116829454 CDS
T07367
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03030
DNA replication
cabi03420
Nucleotide excision repair
cabi03430
Mismatch repair
cabi03440
Homologous recombination
cabi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116829454 (RPA1)
03420 Nucleotide excision repair
116829454 (RPA1)
03430 Mismatch repair
116829454 (RPA1)
03440 Homologous recombination
116829454 (RPA1)
03460 Fanconi anemia pathway
116829454 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cabi03000
]
116829454 (RPA1)
03032 DNA replication proteins [BR:
cabi03032
]
116829454 (RPA1)
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116829454 (RPA1)
Transcription factors [BR:
cabi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116829454 (RPA1)
DNA replication proteins [BR:
cabi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116829454 (RPA1)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116829454 (RPA1)
MMR (mismatch excision repair)
116829454 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
116829454 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
116829454
NCBI-ProteinID:
XP_032644199
Ensembl:
ENSCABG00000020765
UniProt:
A0A8C0J9H6
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MSARLSEGAIAAIMQGENNLRPILQVINIRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLIDEERLSAHCICQVNRYIVNSLKDGRRVIILMDLDVLKTADVVGANIGNPVPYNEG
QGHQQQRSSAPAASPTHSKPQQQNGNSAVGPTTTKYHGPSKQFGKAGGTSFLSTPGGSQS
KVVPIASLNPYQSKWTICARVTQKGQVRTWNNSRGEGKLFSIELVDESGEIRATAFNDQV
DKFFPLIELNKVYYFTKGHLKTANKQYTAVKNDYEITFHNETSVVPCEDAQHLPSVQFEF
VPISNLENTCKDSIVDIIGICKSYEDISKITVKSSNREVSKRNVHLMDRSGKMVTATLWG
DEAERFDGSRQPVVAIKGARVSDFGGRSLSVLASSTVVVNPDSPEAFKLRGWFDSEGQLL
ECTSISDLRGGPTTGGNTNWKTLHEAKSENLGQGDKADYFSCVGTVVFLRKENCMYQACP
SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADCQENQWVTCFQESAEVILGQ
NAAFLGELKEKNEQAFEEVFQNANFSSYEFRIRVKLETYNDESRIKATVMDVKPVNHKEY
SKRLIMNIRKNAVQLG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcggctgagcgagggggccatcgcggccataatgcagggagagaataattta
aggcctatcctacaagtcattaacatccgtgcaatcgccacaggaaatggaccacctcgt
taccgtgtgctgatgagtgatggggtgaacacgctatcctctttcatgttggctacacag
ctgaattctctaattgatgaggagcgcttgtccgctcactgtatctgccaggttaacaga
tacattgttaacagcctgaaagatggaaggagagtgattatattgatggatttagatgtt
ctgaaaacagctgatgtggttggtgcaaatattggcaatccagtaccatacaatgaagga
caggggcaccagcagcaacgttcctcagctccagcagccagcccaacacacagcaaacca
cagcagcagaatggaaattcagctgtaggccccactactactaagtaccatggcccctca
aagcagtttggtaaagcaggtggtactagtttcttgagcacccctggtggatcacagtcc
aaagtggtaccaattgccagtctgaacccataccaatccaaatggaccatttgcgctcgt
gttacccaaaaaggccaggttcgcacatggaacaactcccgtggtgaaggaaagctgttc
tctatagagctggttgatgaaagtggtgaaattagagctactgctttcaatgatcaagtg
gacaagttctttcccctcattgaattgaacaaggtgtattacttcaccaaaggtcatctg
aagacagctaacaagcagtacacagctgtgaaaaatgactatgagatcacattccataat
gagacttctgttgtaccctgtgaggatgctcagcaccttccttcggttcagtttgagttt
gtgcccatctctaacttggagaacacatgcaaagactcaattgtcgacataattggaatc
tgtaagagctatgaagacatctctaaaattacagtgaaatctagtaatagagaggtgtcc
aagaggaatgtgcatttgatggatagatctgggaagatggtgacagctactctgtgggga
gatgaggctgaaagatttgatggttctagacaacctgtggtagccatcaaaggagccaga
gtctctgatttcggtggccggagtctctctgttctggcctcgagtacggtcgtggtgaac
ccagatagtccagaggcatttaagctccgaggatggtttgattctgaagggcagcttttg
gaatgtacctcaatctctgatctgagaggtggaccaacaactggaggaaataccaactgg
aaaacgttgcatgaagctaaatctgaaaatttgggacaaggagataaggcagattatttt
agctgtgtgggcacagtggtattcctacgcaaagagaactgcatgtaccaggcatgtccc
tctcaggactgcaataagaaagtgatagatcaacaaaacggactgtatcgctgtgagaaa
tgcgatcgtgagttccccaacttcaagtatcgtatgatactctcggtgaacattgcagac
tgtcaggagaatcagtgggtgacatgttttcaggaatcagcagaggtcattcttgggcaa
aatgctgctttcctgggagaactgaaagaaaagaatgagcaggcatttgaggaagtgttc
caaaatgccaacttcagctcatacgagttcaggatcagagtcaagctggagacttacaat
gatgaatctcgtattaaggccacagtaatggatgtgaagcctgtgaaccacaaagaatac
agcaagaggctgatcatgaacatcagaaaaaacgcagtacagctaggataa
DBGET
integrated database retrieval system
