Chelonoidis abingdonii (Abingdon island giant tortoise): 116829601
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Entry
116829601 CDS
T07367
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116829601 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116829601 (EDC4)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116829601 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
116829601 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
WDR55
NBCH_WD40
EIF3I
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
116829601
NCBI-ProteinID:
XP_032644387
Ensembl:
ENSCABG00000003958
UniProt:
A0A8C0G924
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MACASIDIEDATQHLRDILKLDRPAGSVNENQRPPNSFNGDLNGLLVPDPVAAGDGAPLA
KPMLRTVPLGTLQEKQVICLSGDDSSTCVVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRGASNGSAMVRVLSISTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWCLAMDNGKIQEEILVNIKRPEGTPLNSFRRIIWCPFIP
DENEESGEEGSQTLALLHEDRAEVWDLDIIRANNSSWPMEVTNIKEGFIVVKGHSTCLSE
GALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSKSVPPSLKACLDLSAEFLI
LSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE
ESDSLSTEGAQGAGAVELAAGVLIKLFCVHTKALQDVQIRFQPLHSPEMAAPIPPHSSHE
DFVFPDHLADLGAEGLGSEKGSVHGSQPDLRRIADLPVPADFLALSNDAKPKLMTPDAFM
TPSTSLQQIALSPGSSISSLTAVTAMSSASVTDPVVPRPSEDLTLSPKMQLDTSLTLSSS
GSSLQTSPRNHSVLIPGLPDKLTPKAPVPVTPANPPLALELQEVEPLVAQASPTRERSPD
VISSASTAMSQDIPEIASETLQRSFAAAPSGLPAEVLEPNHHADSMASAASALHLLSPRN
RHSSEHSQQSLDMAPVEVDRLTTPSLLETALTQENASSNGVVSQPWPAAPDITRETRNSI
ADSPRDDIAEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKASAQ
RLPVKDWKAKVSPRASPKLKRKGKKDDGDVTQSPRPCDRQVTAECQDELMSLLRSQQREL
MELRQNQMELMQRLTDHLDAVQSSLMGHMERVIDSQQEQEQRRLDRALTEGQQRNGQLQE
HLSQQLSQSLSTAACNRLERTIREEMKKTVPQCISKSLDPVTGQLSNTIAAKLTAVEGTL
KENVTKLVKSKNLTDAIARAAADALQGPIQSAYREAFQTVVLPAFEKSCQSMFQQINDTF
KQGTQEYIQQLETHMKNKKAREQEARDSLLGQLRQLISTFQSSTDQLASTITTSVHTEVQ
HQLHVIVGNMQDSILTQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSAHLDF
QAQQTHVLQLLQQGRLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVLLSL
IQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQAEPHNTL
SKPARRLMIMLQGLVTPSMT
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcctgtgccagcatcgacatcgaggacgcgacccagcacttgagggacatcctcaag
ctggaccggccggcaggttcagtgaatgaaaaccagaggccacccaactcgttcaacggg
gacttgaatgggctgctggtgccagaccccgttgcagctggagatggagctcccttggct
aagccaatgctccgaactgttcctctgggaaccctgcaggagaagcaagtcatctgcctt
tctggagatgacagctccacctgcgtggtgatatcggcaaaagacgtggagattgtggcc
agcagtgactctagcatcaccagtaaggccagagggagcaacaaggtaaaaatacagccg
gtagccaggtatgactgggagcagaaatactactatggcaacctaatagctgtatcaaac
tcctacctggcatatgccattagaggtgccagtaatggctctgctatggtgcgggtgctg
agcatcagcactgccgagcggaccttgctgaaaggattcacgggcggcgtggcagacctg
gctttcgcccatctcaactccaaccagctggcctgcctggatgaggctggcaacctcttt
gtctggtgcctggccatggacaatgggaaaatccaagaggagatcttggtgaacataaaa
cgacctgagggcaccccgctgaacagcttccggagaatcatatggtgccccttcatccca
gatgagaatgaggagagcggtgaagagggcagccagacattggcgttgctgcacgaggac
agggcagaggtttgggatctggatattatccgagccaacaacagttcgtggccgatggag
gtgactaacatcaaagagggcttcattgtggtgaaaggccacagcacgtgcctgagcgag
ggagcgctctctccagatgggaccgtcttggccacagcaagccacgacggctatgtcaaa
ttctggcagatctacatagaggggcaagatgagccaaggtgcctgcatgaatggaagccc
catgacggcaggccgctctcctgcctgctcttctgtgataatcacaaaaaacaagaccca
gaggttcctttctggaggtttctcatcactggagcggatcagaaccgagagctgaagatg
tggtgcaccgtttcttggacctgtctgcaaactgtccgcttctcccctgacatcttcagt
tccaaaagtgttcccccgagtctgaaagcctgcctggacctctctgccgaattcctgata
ctgagcgacgtgcagagaaaagtcctgtatgtgatggagcttttgcagaaccaggaggag
ggcagagcttacttcagttccatctcggagttcctcctcacccacccggtcctgagcttc
ggcatccaggtcgtgagccgctgccggctacggcacacagaggtcctcccagctgaagag
gaaagcgacagcctcagcacagaaggtgctcagggggctggggctgtcgaattggcggca
ggtgtgctgatcaagctcttctgcgtccacacgaaggccctgcaggatgtgcagatccga
ttccaacctcttcatagtccagagatggctgcacctatccctccccacagctcccatgaa
gatttcgtgtttccagaccacctggctgacctgggcgcagaagggctgggatcggagaag
gggtccgtccatggctcccaaccagacttacggcgcattgcagacctgcctgtgccagca
gattttcttgctctctccaatgatgctaaacccaagctgatgaccccggatgcgttcatg
accccaagcacatctcttcagcagattgccttgtcaccgggaagcagcatcagttccctg
actgcagtcacagccatgagcagcgcttccgtcactgaccctgttgtgcccaggccatct
gaggacctgactttgagcccaaagatgcagttggacaccagcctcacactgagcagcagt
ggcagcagtctccagacaagtcctagaaaccattcagtccttatccctggacttcctgac
aagctgaccccaaaggctcctgtcccggtcactccagcaaacccccctctggctctggag
ctgcaggaagtggagccccttgtagcccaggcctcacccacccgtgagcgctccccagac
gtcatttcctcagcctccacggccatgtcccaggatatcccagagatcgcctctgagacg
ttgcagcgcagctttgctgcagccccgtccgggctccctgcagaagtgctggagcccaac
caccatgcggacagcatggcctcagccgcctcggccttgcacttgctgtccccgaggaac
cggcacagctccgagcacagccagcaatccctggacatggcccctgtggaggtggacagg
ctgaccacaccctcgttactggagactgctttaactcaggaaaatgcatcttccaacggc
gtcgtgagccagccatggccagcggcccccgacatcaccagggaaacccggaacagcata
gcagacagcccaagagatgacattgcagagaagcacaagagctcttcctatcacaggcac
agctaccacctgctgcagcacgacagccaagatgccagtgcagagcaaagtgaccatgat
gatgaagttgcaagtttggcgtctacatcaggtgggtttggtgccaaagcatctgcacag
cggctgcctgtgaaggactggaaagccaaggtgtctcctcgggcttcccccaagctcaaa
cggaaggggaagaaagatgacggggatgtgacccagtccccgaggccatgtgatcgccag
gtgactgccgagtgccaggatgagctgatgtctctactgcggagccaacagagggagctc
atggagctgagacagaaccagatggaactaatgcagagactcactgaccacctggatgct
gtgcagagctccctcatgggtcacatggaacgagtgattgattcccagcaagaacaagag
cagcggaggctggaccgagctcttacagaggggcagcagcggaacgggcagctccaggag
cacctgtcccagcagctctcgcaatccctctccactgctgcatgcaatcgcctggagagg
accatccgcgaggagatgaagaagacggtgccccagtgtatttccaagagcctggaccct
gtcactggccagctgagcaatacgattgctgccaagctcacagctgtcgaggggacattg
aaggaaaacgtcaccaagctagtgaaatcaaagaacctgacagatgccattgcgagggca
gctgcggatgctctgcaggggcccatccagtcggcgtacagggaggcgttccaaaccgtc
gtgttgccagcatttgagaagagctgccagtccatgttccagcaaatcaacgacaccttc
aagcaggggacgcaggaatatatccagcagctcgagactcacatgaagaacaagaaggcg
cgagagcaggaggcccgagactccttgctgggccagctccggcagctgatcagcaccttc
cagagcagcacagatcagctggcctccaccatcaccaccagcgtgcacaccgaggtgcag
catcagctgcacgtcattgtgggcaacatgcaggactctattctgacccaggtgcagagg
gtcatcaagggagaggtgagcctggccatgaaggagcagcaagcggccgtcacctcgagc
atcgtgcaggcgatgcgctccgcagcaggcacgcccatcccctctgctcacctggacttc
caggctcagcagactcacgtcctgcagctgctgcagcagggccgcctcaaccaggctttc
cagcaggctctcacggcagctgatctgaacctggtcctatacgtctgtgagacggtggat
cctcagcaggtgtttggacagcacccgtgtccgctctcccagcccgtcctcctgtctctc
attcagcagctctcctcggatctgggcacccgcaccgaactgaaactgaattacctggag
gaggcagtgatgcacctggaccacagtgaccccatcacccgagaccacatggggtcggtc
atgaaccaggtgcggcagaagctcttccagttcctgcaggcggagccccataacaccctg
agcaagccggcccgtcgcctcatgatcatgcttcagggcttggtcacccccagcatgacc
taa
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integrated database retrieval system
