Chelonoidis abingdonii (Abingdon island giant tortoise): 116829824
Help
Entry
116829824 CDS
T07367
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04510
Focal adhesion
cabi04512
ECM-receptor interaction
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116829824 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116829824 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116829824 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cabi04147
]
116829824 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116829824 (COL4A4)
Exosome [BR:
cabi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116829824 (COL4A4)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116829824 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116829824
NCBI-ProteinID:
XP_032644767
LinkDB
All DBs
Position
Unknown
AA seq
1675 aa
AA seq
DB search
MPSAGLRLNAATWWLVTLFSVQQIYGGRYSYIGPCGGQDCSVCQCFPEKGSRGQPGHLGA
QGPIGSLGCTGPDGLQGEKGQRGENGLPGPTGEKGDKGPTGVPGFPGLDGVPGYPGIEGS
RGKPGLDGCNGSRGDPGFPGERGCIGPRGSFGVLGQKGEKGNSAYISDFIRGAPGARGEP
GPPGRSGPRGARGPVGPHGLPGQPGLQGAPGLPGLQGEQGNPGIGVDGQKGEPGDVGPPG
SPGQPLLVWPPGSFLVKGEKGVKGMPGLVGPKGSHGPKGAPGNGEKGEKGIPGVPGMQGS
PGSCGSLGFPGVKGESGVPGVPGQAGYAGIKGDRGERGQPGLPGVFGTPPVAVKGPRGDP
GSPGPSGEEGLIGLTGPPGPSGRPGEDGASLPGLPGACGEQGPKGSQGDPGHPGTADSTP
GRPGSPGAPGLPGAPGRQGLPGPPGIVCHGRGLHGQQGIKGQMGLLGRRGEKGEKGNHGH
CSCDLGPAGPPGRRGPPGQQGRKGQMGLPGSYGEKGDPGFSGTKGPTGIPGKPGSSGITG
EKGEKGDLARVKIKGIKGKRGPLGAPGLPGQKGTAGRDGDPGLPGERGIQGDGGSAVPGD
KGFLGAPGLPGSRGTMGPSSLGFPGPPGIGGHPGDPGSTGISGPPGQKGQKGDIHCYVPP
YPGSPGPPGFQGAQGPKGLRGPPGPPGPNGFDGQKGQRGKPGTSGDIGPDGFRGNAGDPG
DEGERGSSPDGAPGFPGTPGLAGQKGVPGDTSYGLPGIPGHRGLPGLSGSQGIRGESGAP
GPQGQSGRPGFPGPKGLRGRKGEIGAPGSPGQPCDKGLQGPPGQPGVLGHRGSPGLPGFK
GQKGDMGPPGPAGMKGLPGTPGVPGPPGPPGPRGYLGLPGNDGLPGVPGQRGSKGIQGIQ
GFPGIPGKGGQTGIPGGNGEQGEMGSRGPPGECGDRGQKGERGAQGDCGFITLWLEKGQK
GEQGLPGEAGFPGETGEKGSPGIRGISGFPGVDGLPGTQNGEPGDSGQIGFPGLPGFPGL
AGLGGISGFQGQPGDQGEPGLPGIPGCPGHDGTKGLKGNRGDSGSQHGPPGQRGPPGDCG
SPGPCGFPGEQGLPGFQGEPGRQGPKGMPGSPGAKGFPGAVCDSGLPGVPGEQGNTGPLG
AAGLPGLPGPPGRKGLSGLPGLDGLNGLEGQKGSPGVPGQSEIGSPGYTGAPGSKGDKGE
PGHPGVSLPGPPGDMGLPGHPGRTGSPGPAGPVGRSPETAASGPPGDQGPPGSHGIRGLP
GNPGPPGKTIFVTGDPGEFGVPGAPGIPGQPGQQGAKGFPGNRGGGGLKGPMGNPGPQGP
LGPFGPSGDRGFQGQPGPRGPEGCRGDPGEPGETEHSPCPKTPGPRGVIGQRGAEGSIGF
PGPIGYPGPSGSKGEEGLFGLPGQDGSPGPPGPSGDKGVIGERGYTGPEGPPGQAGIPGP
PAPETRAAGGFLLILHSQSDKEPFCPEGMPRLWIGYSLLYLEGQEKAHNQDLGLAGSCLP
VFNTMPFVYCNINQVCYYASRNDKSYWLSTAAPLPMMPLSEDEIQPYISRCAVCEASAQA
VAVHSQDHFIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFIECQ
GQRGTCQFFANEYSFWLTIVQPELQFVSAPLSETLKEGQEQRRKISRCQVCMKHG
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgcagggcttcgtctaaacgctgctacctggtggctagtgacacttttttca
gtgcaacagatttacgggggcagatattcatatattggtccatgtggaggacaagactgt
tcggtttgccagtgctttcctgaaaagggatcaagaggtcagcctggtcacctaggggct
caaggtccaattggatctttgggatgtacagggccagatggtttgcaaggagaaaaagga
cagagaggtgagaatggactgcctgggcccactggagaaaagggtgataagggcccaaca
ggagtcccaggatttcctggtttagatggtgtgcctggatatcctggaattgaagggtcc
aggggcaaacctggcttggatggctgcaatggttcaagaggagatcccggatttccagga
gagagaggatgtattggaccaagaggctcatttggtgttcttgggcaaaaaggagaaaaa
ggaaactctgcatatatttcagatttcattagaggtgctccaggagcaagaggtgaacca
ggcccccctggcagatctggacctagaggagctagggggccagtgggcccacatggattg
ccaggccaaccaggcttgcagggagctccaggccttcctggtttgcaaggtgaacagggc
aatccaggtattggagtggatggacaaaagggggagccgggtgatgttggacctcctgga
tctccaggacagccattgttggtttggccgcccggttctttcctggttaaaggagaaaag
ggtgtaaaaggaatgcctgggttggtaggacccaaaggatcacatgggcccaaaggtgca
cctggaaatggagagaagggtgaaaaaggtattcctggagtccctggaatgcagggtagc
cctggttcttgtggatctctcggttttccaggagtaaagggggaaagtggagttcctggt
gttcctggtcaggctggttatgcaggtataaagggggatcgtggagaacgagggcaacca
ggcctgcctggagtttttggaacaccgcctgttgctgtgaaaggtcctcgaggggatcct
ggatcaccaggtccttctggagaggaggggttgattggattaactggtcctccaggccca
tcagggagacctggtgaagatggagcaagcctccctggtctgccaggagcatgtggggaa
caaggtcctaaaggttctcaaggggaccctggtcaccctggaacagctgactcaactcca
ggaagaccggggtctccaggagcaccgggattaccaggagcaccaggaagacagggtttg
cctggaccacctggtatagtttgtcatggcagaggacttcatggacagcaaggaataaaa
ggccaaatgggactcctgggaagaagaggtgaaaaaggagaaaaagggaatcatggccac
tgttcatgtgaccttggtcctgctggcccacctggtagacgagggccacctggtcagcaa
ggaaggaaaggacagatgggacttcctggaagctatggagaaaagggtgatccaggtttc
tctggcacaaaaggaccaacaggaatcccaggcaaacctggttcttctggaataactggt
gaaaaaggagaaaagggtgacctggccagagtaaaaatcaaaggaataaaaggaaaaaga
ggccctctgggggctccagggcttccaggccaaaaaggtactgctggcagagatggagat
ccaggattgcctggagagagaggaattcaaggtgatggtggatcagcagtgccaggtgat
aaaggatttcttggggcaccaggacttcctggttcaagagggactatgggaccatcaagt
ttgggatttcctggcccaccaggaatcgggggtcatcctggagacccaggaagtactggt
ataagtgggccacctggtcaaaagggtcaaaaaggtgacatccactgttacgttccacca
tatcctggaagtccaggccctccaggttttcaaggggctcaaggaccaaagggattaaga
ggaccccctggtcctcctgggccaaatggctttgatgggcaaaagggccaacgaggcaaa
ccagggacatcaggagatatagggccagatggctttcgaggcaatgctggtgatccaggt
gatgaaggtgaaaggggttcttctcctgacggtgccccaggttttcctggcactcctgga
cttgcaggccagaaaggtgttccaggtgataccagttatggtcttccaggaattccaggc
cacagaggattgccaggattatctggttcacaaggaatacgaggtgaatcaggtgctcct
gggccacaaggacagtctggcagaccaggatttccaggtcctaaaggtctgagaggcaga
aaaggtgaaataggcgctccaggctcacccggtcagccatgtgataaaggcttgcaaggg
ccaccaggacagccaggagttcttggacaccgtggctctccaggcttaccaggttttaaa
ggccagaaaggagacatgggcccaccagggccagctggaatgaaaggcctaccaggaact
cctggtgttccagggccccctggtcctccaggccctcgaggatatctcgggcttcctggg
aacgatggattacctggagtcccgggccaacgaggtagcaaaggcatccaaggcatccaa
ggtttcccaggaatcccaggaaaaggaggacagacaggaatcccgggtggaaatggtgaa
caaggagaaatgggttcaagggggcctcctggagaatgtggggatcgagggcaaaaaggt
gaaagaggtgctcagggagactgtggcttcattaccttatggctggaaaaaggacaaaag
ggagaacaagggcttcctggtgaggctgggtttccaggggaaacaggtgaaaaaggcagt
cctggaatcagagggatctcaggatttccaggcgtagatggactcccaggaactcagaac
ggtgaacctggtgatagtggacagattgggtttccagggctgccaggcttcccaggattg
gcgggtttaggaggaattagtggttttcaaggtcaaccaggtgaccagggtgagccaggt
ttaccgggaattcctggatgtccaggacatgatggtacaaaaggacttaaaggtaacaga
ggtgactcaggcagtcaacatggtccgcctggtcaaagagggcctccaggagattgtgga
tcaccaggaccctgtggattcccaggagagcagggtttacccggtttccaaggggaacct
ggaagacaaggacccaaggggatgcctggatccccaggagcaaaaggctttccaggtgcc
gtatgtgattcaggattgccaggagttccaggtgaacaaggtaataccgggcctttaggg
gctgcagggttgccaggattacctggtcccccaggcaggaaaggtttatcagggttgcct
ggattagatggtttgaatggactggaaggtcaaaagggctcaccaggagttccaggtcaa
agtgaaatagggtctccaggatacacaggagcacctggatcaaaaggagacaagggtgaa
cctggacacccaggagtttctcttccaggacctcctggagacatgggtttgccaggacac
ccaggtagaacaggaagtcctgggcctgcaggacctgtgggaagatctcctgaaactgca
gcttctggtcctccgggtgatcaggggccacctggctcacatggcatcagaggcctgcct
ggcaatcctggccctcccggaaagactatctttgtgacaggcgatccaggggaatttggt
gttccaggtgcacccggtattcctggccagccagggcagcaaggagccaaaggctttcca
ggaaatcgaggaggaggcggcctgaaaggtccaatgggaaaccctggcccccagggtccc
cttggtccttttgggccatctggggatcgaggttttcaaggacaacctggccctcgaggt
cccgaaggttgcagaggtgaccctggtgaaccaggagaaacagaacactccccatgtccc
aagacgccaggtcctcgtggagtaataggacaaagaggagcggaagggtctataggattt
ccagggccaataggttaccctggaccctcaggaagtaaaggtgaagaagggttgtttggc
ttgccaggtcaagatggctcacctggtccaccaggaccctcaggtgacaaaggtgtcata
ggagaacgaggatacactggtccagaaggtccacctggccaagctgggatcccaggacca
ccagcgcctgaaactagagctgctggtgggttccttctcattcttcacagtcagtcagat
aaagaaccgttttgtcctgagggaatgccaagattgtggataggatatagtctgctgtat
ctggaaggacaggagaaagctcataatcaagatcttggtctggctggatcctgtcttcct
gtattcaacaccatgccatttgtctattgcaacatcaaccaagtttgttactatgccagt
cgaaatgataagtcctactggctgtcaactgctgctcccttaccaatgatgccactctct
gaagatgaaatacaaccctacattagcagatgtgctgtatgtgaggcctcagcccaagct
gtagcagttcatagccaagatcatttcattcccccatgcccgttgaactggagaagtctt
tggataggctattcttttttaatgcacaccgggtctggagatcagggaggtggacagtcc
cttatgtcacctggaagttgccttgaagactttagatcagcaccattcatcgaatgccag
ggtcagcggggaacatgccaattttttgctaatgaatatagcttctggttaacaatcgtc
cagccagaattgcagtttgtgtctgctcctctgtcagaaacccttaaagaagggcaggaa
cagcgcagaaaaatcagcagatgtcaggtctgcatgaagcatggctaa
DBGET
integrated database retrieval system
