Chelonoidis abingdonii (Abingdon island giant tortoise): 116829865
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Entry
116829865 CDS
T07367
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116829865 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116829865 (SKIV2L)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116829865 (SKIV2L)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116829865 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
116829865 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ski2_N
DEAD
DSHCT
DEXQc_Suv3
ResIII
PhoH
Motif
Other DBs
NCBI-GeneID:
116829865
NCBI-ProteinID:
XP_032644817
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MWGGWCVGTQRPVVESDPPVSPPELPPRGPMELPLSVLEVGCAGRFELITRPEGPDGDTF
PLSTLPHGLPPYAMDLAPELERRFLASPEWLPLHHFDRAPRVWLREKDVWSLLEMDPTPV
HSTLQTERDPTTGRILAFREAPLDNMGLSAKNSLSFQRAPGPPAQALRGSSTNYPFWPGG
MDEPSMEQISAKGHLEEEIDFERDLLTVPPGWKKGVEFKPQGTDPPTGEPWGGPPPPTQA
VPPQPPKEQWAIPVDISSPVDDFYKRIPDPAFRWPFEPDVFQKQAILHLEKHDSVFVAAH
TSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDA
SCLIMTTEILRSMLYNGSDAIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVNIILL
SATVPNTLEFADWIGARPGVSPYPLPLPPLRWDGRLPLSPFAPGQASPLTRCPPRYYAAV
EAKKERSSKHAQTFGAKQPTHTGTGPGQEKGVWLSLMDMLRKRDQLPVVAFTFSRARCDD
NASALTTLDLTTSTEKSQIHLFFQKCLSRLKGSDRQLPQVLHMVELLKRGIGVHHSGILP
ILKEVVEMLFSKGLVKPFAEIARLTEVQEGIIVRCIQRLDETCRDVRNAARVIGEPTLYA
KMEQASNLIKRDIVFTASLYTQ
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtgggggggatggtgtgtgggtacccagaggccggttgtggagtctgacccccctgtg
tcccccccagaactgcccccccgggggcccatggagctgcccctctccgtgctggaagtg
ggctgcgccggacgcttcgaactcatcacccgcccggaggggcccgacggggacacgttc
cccctctccacgctgccccacgggctgcccccctacgccatggacctggccccggagctg
gagcggcgcttcctggcgagccccgaatggctgcccctccaccacttcgacagggccccc
agggtctggctgcgggagaaggacgtctggtcgctgttggagatggaccccacccctgtg
cactccacgctgcagacggagcgggaccccaccacggggcggatcctggccttcagagag
gcacccttggacaacatggggctgtcggcgaagaactcgctctccttccagcgggcgccg
gggccccctgcccaggccctgcggggcagcagcaccaactaccccttctggccaggtggg
atggatgagcccagcatggagcagatcagcgccaaaggccacctggaggaggagattgac
ttcgagagagacttgctgacggtgccgccgggctggaagaagggggtggagttcaagccg
caaggtaccgaccctccgactggggagccctggggagggcccccgccgcccacccaagcc
gtgcccccccagccccccaaggagcaatgggcgattcccgtcgacatctcctcgcctgtg
gacgacttctacaaacgcatccccgacccggccttccggtggccgttcgagccggacgtg
ttccagaaacaggccatcctgcacctggagaagcacgactcggtcttcgtggccgcacac
acctcggcggggaagacggtggtggccgaatacgccatcgccctggcccagaagcacatg
accaggaccatctacacctcccccatcaaggctctgtccaaccagaagttccgagatttc
aagaacacctttggggacgtggggctgctgacgggggacgtccagctgcaccccgatgcc
tcctgcctcatcatgaccaccgagatcctgcggtccatgctgtataacggctcggacgcg
atccgggatctggagtgggtgatcttcgacgaggttcactacatcaacgacgcagagcgc
ggcgtggtgtgggaggaggtgctgatcatgctgccagagcacgtgaacatcatcctgctg
agcgccactgtccccaacacgctggagttcgctgactggatcggcgcccggccgggggtc
tccccttatccgctgcccctgccccccttgcgctgggatgggcgcctccctctgtccccc
ttcgcaccgggccaggcgtctcccctcacccgctgtccccccaggtactacgcggcggtg
gaggcgaagaaggagcgctccagcaaacacgcccagacctttggggccaagcagcccacg
cacacgggcaccgggccgggccaggagaagggcgtgtggctctcgctgatggacatgctg
cggaagcgggaccagctgcccgtggtggccttcaccttctcccgcgcccgctgcgacgac
aacgcctccgcgctcaccaccctcgacctgaccacgagcaccgagaagagccagatccac
ctcttcttccagaagtgcctgtcccgcctcaagggctccgaccgccagctgccccaggtg
ctgcacatggtggagctgctgaagcggggtatcggggtgcaccacagcgggatcctgccc
atcctcaaggaggtcgtggagatgctcttcagcaaagggctggtcaagcccttcgctgag
atcgcccggctgacggaggtgcaggaggggatcatcgtgcgctgcatccagcggctggac
gagacctgccgggacgtgcgcaacgcggcccgcgtcattggggagcccacgctgtacgcc
aagatggagcaggcctccaacctcatcaagagagacatcgtcttcaccgccagcctctac
acgcagtga
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