Chelonoidis abingdonii (Abingdon island giant tortoise): 116829878
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Entry
116829878 CDS
T07367
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116829878 (CASC3)
03015 mRNA surveillance pathway
116829878 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116829878 (CASC3)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116829878 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
116829878
NCBI-ProteinID:
XP_032644842
Ensembl:
ENSCABG00000011190
LinkDB
All DBs
Position
Unknown
AA seq
709 aa
AA seq
DB search
MADRRRQRASQDSEDESDSAASDSVDSPAGAARSGSPASPPRARPERPRTCSGAAWAAGP
ESGRGRPEGPAGSRESEDGIEGDAVLSDYESAEDSEAEEGEYSEEEGAKVELKQASNNAS
ESTGKAEKGEEKPDPKGAVTGERQSGDGQESTEPAENKVGKKVPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQAQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRMRKPRFGSPPQREPNWANERQNKAPRPQGSDSDLPPTRTFISRNST
GVGRMPPARNFPRMSGYKENRPSYRAVEANSQHLSRTREPAKHESSYRARRVEQALERDP
SPEAEIAHLHSSPVKKEEVILESQTPSADSVQPPPDRPIEKKSYSRARRTRNKAGDAGKL
ADEVPPPEGLTPVTPKPVQVVMPPPPAKAGSWETPVESSMDGLEQDMTQLNLTEQTWTQG
QPPFIQPRELRGIPNHMHMGAGPPPPQFNRMEEMGVQGGRAKRYSSQRQRPPVPEPAPPM
HISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLANPG
LYPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPSYPYPPGALPPPPPPHLYPNTQAQA
QVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPELLVAGCKQGSS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcggcggcagcgggcctcccaggacagcgaggacgagtccgactcggcc
gcctccgacagcgtcgattccccggccggcgcggcccgctccggctcccccgcctcgccc
ccgcgagcgcggccggagcgtccccggacctgctccggggcggcctgggccgcgggacca
gagagcggtcggggccggcccgaaggccctgctgggtctcgagaaagtgaagatggcatc
gaaggagatgctgttctgtcggattacgaaagtgcagaagactccgaggctgaggaaggg
gagtacagcgaagaggaaggcgcaaaggtggagctgaagcaggcgagtaacaatgccagt
gaatccacaggaaaagctgagaaaggggaagagaagcctgacccgaaaggtgctgtgact
ggcgagagacaaagcggggatgggcaggagagcactgaaccagctgagaataaagttggg
aaaaaggtccccaagcacttggatgacgacgaggatcggaagaaccctgcatacataccc
cgcaaagggctcttctttgaacatgatctccgaggacaggcccaggaggaggaagtcagg
ccgaagggtcgccagcgaaagctttggaaagatgagggccgctgggaacatgacaaattc
cgggaagatgagcaagcccccaaaagcaggcaggagctgattgcgctctacggctatgac
atcaggtcggctcacaatcccgacgacatcaagccgaggaggatgcgcaaaccacggttt
gggagtcctccgcagcgagagccaaactgggccaacgagaggcaaaacaaggcgccaaga
ccccagggctctgatagtgatctgccgccgacacgaaccttcatcagccggaactccaca
ggcgtgggtaggatgccccctgccaggaactttccaaggatgagcggctacaaagagaac
cgtccaagctaccgagctgtggaggccaacagccagcacctctctcgaacgcgtgagccg
gctaaacacgagagcagttaccgggcaaggcgtgttgaacaagccctggagagagacccc
tctcctgaagctgagattgcgcatcttcacagcagtcctgtcaagaaggaagaggtcatt
ttggaaagccagacccccagtgcagactctgtacagccaccaccagatcgacccatcgaa
aagaagtcctactcccgggcaaggaggactcggaataaagctggcgatgcaggaaagctg
gcagatgaagtgccgcctccagaaggcttgacgcctgtgactccgaaaccagtgcaggtc
gtgatgccccctccgcctgcaaaggccggtagttgggagacaccagtagaatccagcatg
gatggactcgaacaagacatgactcagttgaatctaaccgagcagacctggacccaagga
cagcctccgttcatacagcctcgggagcttcggggtattcctaatcatatgcacatggga
gctggaccaccaccacctcagttcaacaggatggaggaaatgggagtccaggggggccgt
gcaaagcgttactcgtcccagcgtcagcggccaccagttccagagcctgctccacccatg
cacatcagcatcatggaagggcactattatgatccattacaattccagggaccaatctac
acacacagcgagaatcctgccccgttgcccccccagggtatgattgtacagccagaaatg
cacctcccacatccaggtttacatccacaccagacaccggcacctttggctaaccctggc
ttatatcctccaccagtctccatgcctcctgggcaaccacccccgcagcagctgctcgca
cccacctatttctcccctcctggagtcatgaattttgggaatcccagctacccctatccc
ccaggagcactcccaccaccacctcctccccatctgtatcccaacacacaggcccaggcc
caggtgtacggaggagtcacctactacaacactgtccagcagcaagtacagccgaaacct
tcaccaccacgaagaacatcccagcccgtcactatcaagccgccgcctcccgagcttctc
gttgcaggttgtaagcagggctccagttaa
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integrated database retrieval system
