Chelonoidis abingdonii (Abingdon island giant tortoise): 116829895
Help
Entry
116829895 CDS
T07367
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
cabi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116829895
09122 Translation
03013 Nucleocytoplasmic transport
116829895
03015 mRNA surveillance pathway
116829895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116829895
03041 Spliceosome [BR:
cabi03041
]
116829895
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116829895
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116829895
Spliceosome [BR:
cabi03041
]
Complex C
Other components
EJC/TREX
116829895
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116829895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
116829895
NCBI-ProteinID:
XP_032644869
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MGQRHNPGIAEPAERQGPDPEGLVGRRVTAPEATICVSIQRRVNVSVEEQRVAAIGPGWG
SQGRRPRLQAMVGNQPGRRWGEGRTPSWDVAGGISAIVLERRTVRSKADSTHKTAHTGRQ
MLELGQDQNTLLSACSLANQQPSAFTNQITATDPRADAHKPFTQVPVAPTVSLLALGLGE
ERDPEVGAGGAEPQLTPPSLPAVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE
PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHI
VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS
ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFN
QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG
RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE
VNISELPDEIDISSYIEQTR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgggccaacgacacaatcctgggatagcagaaccagcggagaggcagggcccggatccc
gagggtctggtggggcgcagggtaactgcaccggaggcaacaatctgcgtgtcaatccag
cgccgggtgaacgtctccgtggaggagcagcgcgtggcagccatagggccagggtggggg
tcacagggccgccgaccccgactgcaggcgatggtggggaatcagccagggcggcgctgg
ggcgaggggcggacaccgtcctgggatgtggccggcgggatctcggcaattgtcctagaa
cgccggacagtccggagcaaagctgactcgacacacaagacagcccacacgggtaggcaa
atgctggagctgggacaagaccagaacacgctgctttcagcctgcagcctggctaaccag
caaccatcagcgttcacgaatcagatcacagccaccgacccgcgggccgacgctcacaag
ccatttacccaggtgcccgtcgctcctaccgtctccttgctggccttggggctgggagag
gagcgggacccggaggtcggagcagggggggctgagccccagctgactcccccctccctc
cccgcagtgcagcacgagtgcatcccacaggccatcctgggcatggacgtgctgtgccag
gccaagtcgggcatgggcaagacggccgtgttcgtgctggccacgctgcagcagctggag
cccgtcacggggcaggtgtcggtgctggtgatgtgccacacgcgggagctggcattccag
atcagcaaggagtatgagcgcttctccaagtatatgcccagcgtcaaggtggcggtgttt
ttcgggggcctgtccatcaagaaggacgaggaggtgctgaagaagaactgcccccacatc
gtggtggggacgccgggccggatcctggccctggcgcgcaacaagagcctcaacctcaaa
cacatcaagcacttcatcctggacgagtgcgacaagatgctggagcagcttgatatgcgc
cgggatgtccaggagatcttccgcatgaccccgcacgaaaagcaggtcatgatgtttagc
gccaccctgagcaaggaaatccgccccgtctgccgcaaattcatgcaagaccccatggag
atcttcgtggacgacgagacgaagctgacgctgcacggcctgcagcaatactatgtcaag
ctgaaggacaacgagaagaaccgcaagctcttcgacctgctcgacgtgctggagttcaac
caggtggtgatcttcgtcaagtcggtgcagcgctgcatcgcgctggcccagctgctggtg
gagcagaacttcccggccatcgccatccaccggggcatgccccaggaggagaggctgtcc
cgctaccagcagttcaaggatttccagcgccggatcctggtggccaccaacctcttcggg
cgggggatggacatcgagcgggtcaacatcgccttcaactacgacatgcccgaggactcc
gatacctacctgcaccgggtggcgcgcgccgggcggttcggcaccaagggcctggccatc
acctttgtgtcagacgagaacgacgccaagatcctgaacgacgtgcaggatcgctttgag
gtgaacatcagcgagctgcccgacgagatcgacatctcctcctacatcgagcagacccga
taa
DBGET
integrated database retrieval system
