Chelonoidis abingdonii (Abingdon island giant tortoise): 116830262
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Entry
116830262 CDS
T07367
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116830262 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116830262 (LIG3)
Enzymes [BR:
cabi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116830262 (LIG3)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116830262 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116830262
NCBI-ProteinID:
XP_032645561
Ensembl:
ENSCABG00000002691
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MPAVLKVLFSQTARTLSRREGLCLPQRQACLLRFESCLLGLPVANPFTWSQLLVRNKSLL
SASRSRGACAEEFAVASALRVWPRRRCTVPDEMAEQRYCVDYAKRGTAGCKKCKEKILKG
MVRIGKVVPNPFTESGGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDPEKD
MINQHISETTSKAANTPKKKATIQAKLSPSGQITSPKKELLVTPNPSPKKFSGFKAKPGN
SDEVPESSPHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLQKGTA
RDGFHGDLYLTIKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVR
IFFEESKSCSPAAKSLLTIQEVDEFLTQLSKLSKEDDQQSVLQDIASRCTGNDLKCIIRL
IKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQNVVERVLRNQQETEKLPGLKRTLSVQA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLP
HKVAHFKDFIPQAFPGGHSMILDAEVLLIDNKAGKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNETSLMDRPLRERRKFLHDNMVEIPNRILFSEMKHVTKASDLVDMISRVIREGLE
GLVLKDVKSTYEPGKRHWLKVKKDYLNEGAMADTADLLVLGAFYGQGSKGGMMSIFLMGC
YDPKSQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKNYYPDFIVPD
PKKAPVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLPQLKELYQLSKEK
SDFNIVVAEEEGSTASSSGENEGNSRSSTPHKIAKTPPSKSPPKAKKPEGSKAVGRSPQK
KAEEKRGEKRKAAQLDDNRKKTLLDIFTGVKLYLPPSVEDFSKIRRYFVAYDGDLVQEFD
AASATHVIEDVDENPGAKRVSPDWIWECIRKRRLVAPC
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgttctcaaggtcctcttctcacagactgccaggacactaagcagaagggaa
ggactttgcttgccccagagacaggcttgtctgctgagatttgaaagttgccttctgggt
ctccctgtggccaacccatttacttggtcccagttgctggtaagaaataagtctctcctt
tctgccagcagaagccggggagcttgtgctgaagagtttgctgttgcttcagctttgcgt
gtttggcctcgtaggcgctgcacagtccctgatgagatggcggagcagaggtactgcgtg
gactacgccaagcgcggcacagccggctgcaagaaatgtaaggagaagatcttgaagggg
atggtgcgcattggaaaggtggtccccaaccccttcacagagtcaggtggggaaatgaag
gagtggtaccatgtgaagtgcatttttgagaagctagagagggctcgggccacaacaaag
aagattgaggacatcacagacttggagggttgggaagagctccaggatccggaaaaagat
atgataaaccagcatatatcagagaccacttccaaggcggcgaacacacctaagaaaaag
gcgactatccaggcgaagctctcccccagtggacagataaccagtcccaagaaggagcta
ctagttacccctaatccttctccaaagaaattctctggcttcaaagctaaaccgggcaat
tctgatgaagtccctgaaagctctccccacaagtctagcctctctgcaaagaagtgtgac
ccaaagcacaaagattgcttgctgcgggagttcagaaagctgtgcgccatggttgccgag
aagcccagctataatgtgaaaacgcagatcattcaggacttcttgcaaaaaggaactgca
agagatggcttccatggtgacctctacctgactattaagctgctattacccggtgtcatt
aaaagtgtttacaacttgaacgacaagcagattgtcaagctgttcagcaggattttcaat
tgcagccaggaggagatggtccgagatctagagcagggagatgtttccgaaactgtgcgc
atcttttttgaagagagcaagtcctgctctcctgctgccaaaagtctccttaccattcag
gaagtggatgaattcctcactcaactttcaaagctttccaaggaggacgaccagcaaagt
gtgctgcaggatatcgctagcaggtgcacagggaatgacctgaaatgcatcatccggcta
ataaagcatgatctgaaaatgaatgctggtgcaaagcatgtgttggatgctttagatcct
aatgcttatgaggcattcaaagcctcacgcaatctccagaatgtggtggagcgagtgctg
aggaaccagcaggagactgagaagttgccaggtctgaagcgaaccctcagcgtgcaggcc
tcactgatgacccctgttcagcccatgctggctgaagcctgcaagtcaatcgaatacgca
atgaagaagtgccccaatgggatgtatgcagagatcaaatacgatggggagcgagttcag
gtccacaagaatggagatcacttcagctacttcagccgaagcctcaaacccgtcctccct
cacaaagtagcccattttaaggacttcatcccccaggctttccctggtggacatagtatg
atcctggatgcagaagttcttctgattgacaacaaagctggcaaaccgctacccttcggg
acccttggagtgcataagaaagctgctttccaggatgccaatgtctgcttgttcgtgttt
gactgcatctatttcaatgagaccagcctaatggacaggcccttgcgtgagcgtcggaag
tttctccatgataacatggtggaaatccccaatcggatactcttctccgagatgaagcat
gtcacaaaagcttcagatctggtagatatgatcagtcgagtcatccgtgaagggctggaa
ggactagtgctgaaagatgtaaagagtacgtatgagcccggtaaacgtcactggctaaaa
gtgaaaaaggactatctgaatgaaggtgccatggcggacacggcagacctgctggttctg
ggagctttctatggacaaggcagtaaaggtgggatgatgtccattttcctcatgggctgc
tatgaccccaaaagccagaaatggtgcacggtgacaaagtgctctggtgggcacgatgat
gccaccctggctcggctgcagaaggagctggacatggtgaagatcagcaaggatcccagt
aaaattccaagctggctgaaaatcaacaagaactattatccagatttcattgttccagac
ccaaagaaagccccagtgtgggagatcacaggtgctgagttctctaaagcagaagcccac
actgcagatggcatctccatccgcttccctcgctgcacccggatccgagatgacaaagac
tggaagacagccaccaacctccctcagctcaaggagctgtaccagctctccaaggagaag
tccgatttcaatattgttgtagcagaggaggaggggtccacagccagcagcagtggtgag
aatgagggaaattctaggtcttccacaccccacaaaattgctaagacccccccaagcaag
tcacctccaaaagccaagaagccagaaggcagcaaagcagttggtcgatccccccagaag
aaggcggaggagaagcgaggggagaaacggaaagcagcacagctggatgacaacagaaag
aagacgctgctggacatatttacaggggtgaagctgtacctaccgccctccgtggaggac
ttcagcaaaatccgccggtactttgtggcgtatgatggagaccttgtgcaagagttcgat
gctgcctcagcaacgcacgtaatagaggacgttgatgagaaccctggagccaaacgcgtc
tctcctgactggatctgggagtgtatccggaaacggaggctagtggccccctgttaa
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