Chelonoidis abingdonii (Abingdon island giant tortoise): 116830456
Help
Entry
116830456 CDS
T07367
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116830456 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cabi03041
]
116830456 (PRPF40A)
Spliceosome [BR:
cabi03041
]
Complex A
U1 snRNP components
U1 related factors
116830456 (PRPF40A)
Complex B
116830456 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
116830456
NCBI-ProteinID:
XP_032645838
Ensembl:
ENSCABG00000006814
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MSGGDSAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKGSRLGGRPDWPGG
KPVSLLAPLLPPRGEPEPLMPFGPSSRQQLRGRLLGRCGGGSLLNPSMRPGGVDRGSLMM
GHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSMMPGMMMS
HMSQAHMQPTVPPGVNSMDTQVGTTPPGTQITHQIVCAAQQTTTTNSSINEDPSKQKSMW
TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKE
SRWAKPKELEDLEAMIKAEENSKPEESTPTSSAPAVATEITDTVTATAAATTTTTATTTT
SDVETAVAATAATVIPAVAAAPEAEASTVASVVENESTVTTTADEQVQQTTTTTTTTTTT
PAATTIVTPVVQEQNAEAVTNTVEETSKQEASVDVAPKKEEEDTQPVKKTYTWNTKEEAK
QAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEAR
SKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSK
KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDA
LICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELY
PTISSDIRFTNMLGQPGKTTSSSNNVESDTVFSLGSTALDLFKFYVEDLKARYHDEKKII
KDILKDKGFLVEVNTTFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFIHV
LEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESRSVSDRSSS
AESERSYKKSKKHKKKNKKRRHKSDSPESDIEREKDKKEKERENEKDRPRQRSESKHKSP
PKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggggactcggcggctgctgcggcctcccctcagccgctccccttctccttg
ccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgccccgttgcctcc
gctgcggaccaatcgccgaagggttcccggttgggaggccgcccggattggccgggtggg
aagcctgtcagcctactggccccgctgctcccgccccgtggtgagcccgagcctctgatg
ccttttggcccttcctcgcggcagcagcttagagggaggcttcttggcaggtgtggcggg
gggagcctcctgaacccctcgatgaggccgggcggagtggatagaggatccctcatgatg
gggcacccaggcatgccgcattatccacctatgggaatgcacccgatgggccagagacca
ccgaatatgccaccagttccacatggaatgatgcctcagatgatgcctccaatgggaggg
ccaccaatggggcagatgcctggaatgatgcagtcaatgatgcctggaatgatgatgtct
catatgtcccaagctcatatgcagcctactgtaccgccaggagtaaacagtatggacaca
caagtaggcactacgcctcctggaacgcagatcacacatcaaatagtttgtgcagcccag
caaaccaccacaaccaacagttctataaatgaagatccttctaaacagaaatctatgtgg
actgaacataaatcaccagatggaagaacttattattataatactgaaacaaaacaatct
acatgggagaagccagatgatctcaaaacacctgctgagcaattgttatctaaatgccct
tggaaagagtacaaatctgactctggaaagccttattactacaattcccaaactaaagaa
tcacgctgggcaaaacccaaagagcttgaagatcttgaagcgatgattaaagctgaagaa
aacagtaaaccagaagaatcaactccaacatcttctgctccagctgttgcaacagaaatt
acagataccgttactgccacggccgccgctaccaccaccaccaccgccaccaccaccacc
agtgatgttgaaactgccgtggctgctactgcagccactgtcattcctgctgtagcagca
gctcctgaagctgaagcttctacagtagcttctgttgtagaaaatgaaagtacagtaact
acaacagctgacgaacaagtgcagcaaactactaccaccaccaccaccaccaccaccacc
cctgctgccacaaccattgtcacccctgttgtacaagagcagaatgcagaagctgtcact
aacactgtagaggaaacttctaaacaggaggcttcagtggatgttgctcccaaaaaagag
gaagaggacacccagccagttaaaaaaacgtatacatggaatacaaaagaagaagcaaag
caagcatttaaagaactgttgaaagaaaagcgtgtaccatccaatgcctcatgggagcaa
gctatgaaaatgatcattaatgatcctagatacagtgcattggcaaagttgagtgaaaaa
aagcaagcctttaatgcttacaaggtccagacggagaaagaagaaaaagaagaagcaaga
tcaaaatacaaagaagctaaagaatcctttcaacgtttccttgaaaaccatgaaaagatg
acatctacaacaagatacaaaaaagctgaacaaatgtttggtgagatggaggtctggaat
gcaatatcagaacgtgatcgtcttgaaatttatgaagatgtcttgttctttctgtctaaa
aaagaaaaggagcaggccaagcagttacgaaagaggaattgggaggctttgaaaaacata
ttggacaacatggctaatgtaacatactctaccacttggtcggaggcccaacagtatctg
atggacaatcctacatttgcggaggatgaagaacttcagaatatggataaagaagatgca
ctgatttgttttgaagaacacatcagggctttggaaaaagaagaggaagaagaaaaacag
aagagtttgcttagggaaaggcgacgacaacgtaaaaatagagaatcttttcagttattt
ttggatgaattacatgaacatgggcagttacattcaatgtcctcctggatggagttgtat
ccaaccataagttctgacatcagatttactaacatgcttggtcagcctggtaagactact
tcctcttccaacaatgtagaaagtgatacagttttttcgttaggatcaactgcacttgat
cttttcaagttttatgttgaagatttgaaagcacgttaccatgatgaaaagaagataata
aaagacatcttaaaggataaaggatttctggttgaagtgaatactacctttgaagacttt
gttacggtcatcagttcaactaaaagagctaccactttagatgctggaaatatcaaactg
gctttcaatagtttgctggaaaaggcagaagcccgtgaacgtgagcgggagaaagaagag
gctcgcaaaatgaagcggaaagagtctgctttcaagagcatgttaaaacaagctacgccc
ccaattgaattggatgctgtttgggaagatatcagagagagatttgtgaaggaaccagca
tttgaagacatcactctagaatctgaaagaaaaagaatctttaaagactttatacatgta
ctagagcacgagtgtcaacatcatcattcaaagaataagaaacattctaaaaagtctaaa
aagcatcacagaaaacggtctcgctcccgttcgggttcagagtctgatgatgatgatagc
cattcaaagaagaagaggcaacgctcagaatctagatcagtttctgatcgttcttccagt
gcagaatctgagagaagttacaagaagtcaaaaaaacacaagaagaaaaacaaaaagagg
agacacaagtctgattcaccagaatctgatattgaacgagaaaaggataaaaaagaaaaa
gagagagagaatgaaaaggatagacctagacaaagatcggaatcaaagcataaatctcct
cctaaaaaacgtcctggaaaagattctggtaattgggatacatctgggagtgaactgagt
gaaggggaattagaaaaacagagaagaaccctcttggaacaactggatgaagatcaataa
DBGET
integrated database retrieval system
