Chelonoidis abingdonii (Abingdon island giant tortoise): 116832150
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Entry
116832150 CDS
T07367
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116832150 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cabi01009
]
116832150 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cabi04515
]
116832150 (PCDH1)
Protein phosphatases and associated proteins [BR:
cabi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116832150 (PCDH1)
Cell adhesion molecules [BR:
cabi04515
]
Cadherins
Protocadherins
116832150 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
K319L-like_PKD
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
116832150
NCBI-ProteinID:
XP_032648571
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MEKPEVPRTRRSPLPTPVQCRMTWVAACLGLWLVLQLPTLGAGTRVVYKVQEEQPPNTLI
GSLAADYGFPDVRHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQSQLPGELCFL
EFEVSITDLTMNSSPRLLEGQIEVLDINDNTPNFASPVITLAIPENTNIGALFPIPLAMD
RDAGANGVASYELLAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQD
GGSPPRASSALLRITILDMNDNTPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAE
IDYSFHQATDMVRRLLRLDRTTGLITVQGPIDREDVNILKFSVLAKDKGANPKSARTQVV
LTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVV
AGDVPFQLRQASETGSDSKKKYFLQTTIPLDYEAVKEYIIEIVAVDSGNPPLSSTNSLKV
QVMDVNDNAPVFSQSLTEVAFPENNAPDDLVVEVSASDADSGSNAKLVYSLDMDPSSKGF
FSIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKGTASVAISVMDRNDNDPKFML
SSYNFSVMENMPPLSPVGMVTVIDADKGDNARIQLSVEQDNGDFVIQNGTGTILSSISFD
REQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNASYKHILPHTSPGQ
QVSKVKAEDIDSGVNAELTYRITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRV
NDKGKPSRHGTALVHFYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRSNIL
FGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQGNKSSKSKSKVKK
SKSPKPPKPADDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPL
PSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLP
HRRVTFSAANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPD
GSIGEIEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPNRRPKTALKLSTFV
PYQERGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTS
DFQPATTPSSQTTKREIYL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggagaagccggaggtgccgcgcacacggcgctctcctctgccaacccctgtccagtgc
aggatgacatgggtggcagcctgcctgggcctgtggctcgtcctgcagctccccaccttg
ggcgctgggacacgtgtggtctacaaagtgcaggaggaacagccacccaacacactcatt
gggagcttggctgctgactacggctttcccgacgtgaggcacctctataagctggaagtg
ggggccccctacctgcgtgtggatggcaagacaggggacatttacaccacggagacctcc
attgaccgggagagcctgcgggaatgtcagagccagctcccaggggaactctgcttcctg
gagttcgaggtgtccatcacagacctgacgatgaacagcagcccacgcctgctggaaggg
cagattgaggtgctggacatcaatgacaacacgcccaacttcgcctcgcctgtcatcaca
ctggccattcctgagaacaccaacatcggggcactcttccccatccccctggccatggac
cgcgatgcaggcgccaacggggtcgcctcctatgagctcctggctgggcccgaggcgcag
gagctcttcggcctgcaggtggctgaggatcaggatgagaagcagccgcagctgattgtc
atggggaacctggaccgggagcagtgggactcctatgacctgaccatcaaggtgcaggat
ggaggcagcccaccgcgggcaagcagcgctctgctgcgtatcaccatcctggacatgaat
gacaacacccccaagtttgagaaggccctgtatgaggcagagctctcagagaacagcccc
gtggggcactccgtcctccaggtgaaagccaatgactcggatcagggtgccaacgccgag
attgactactccttccaccaggcaacggacatggtgcgccgcctgctgcgcctggacagg
accacgggcctcatcactgtgcaggggcccattgaccgggaggatgtcaatatcctcaag
ttctctgtcctggccaaggacaagggggccaatcccaagagtgcccgcacgcaggtggtg
ctgaccatcaaggacatgaatgacaatgccccctccattgaaatcaggggtattggcctc
gtcacccatcaggatggcatggccaacatctccgaggacgtgcccgtggagacggccgtg
gctctggtacaggtatctgaccgggatgagggtgagaacgctgtggtcacctgtgtggtt
gctggcgatgtcccattccagctgagacaggccagcgagacaggcagtgacagcaagaag
aagtacttcttgcagaccaccataccgctggactacgaggcggtgaaggagtacatcatt
gagattgtggctgtggactcggggaacccgcccctctccagcaccaactccctcaaggtg
caggtgatggatgtgaacgacaatgctccagtcttcagccaaagcctcaccgaggtggcc
ttccccgagaacaatgcccctgatgacctggtggtggaggtgagtgccagtgacgctgac
agtggatccaatgccaagctggtttactccctggatatggacccctcctccaagggcttc
ttctccatcgaccctgactcaggcgagatccgagtgaagacggtgctggaccgggagcaa
agggagcgctacgagttcctagtggtggcagctgacaaaggcagccccagtctcaagggc
acggcatctgtggccatcagtgtcatggacaggaatgacaacgaccccaagtttatgctg
agcagctacaacttctcagtgatggagaacatgcctcccctgagcccggtgggcatggtg
acggtgattgacgctgacaagggtgacaacgcccgaatccagctgtcagtggagcaggac
aacggggactttgtcatccagaatggcactggcaccatactttccagcatctcctttgac
cgggagcagcagagcacgtacacctttcgtctcaaagctgtggatggcggggaccctcct
agatccgcctacgtgggggtgaccatcaacgtgctggatgagaacgacaatgcccctttc
atcacctccccttccaatgcctcttacaagcacatcctgccccacaccagccccgggcag
caggttagcaaggtcaaggctgaggacattgactcaggggtcaatgcagagctgacctac
agaatcacagggggcaaccccttcgagttgttccagatctcaccacagagtggggacatc
accctggagaaggagatcctgcgcaagcaccatggcctgcaccgcctggtggtgcgtgtt
aacgacaagggcaagccctcgcgtcatggcaccgcgctggtgcacttctacgtcaatgag
accctggccaatcgcacgctgctggagaccctgctgggacacagcctggacacgccactg
gacatcgacattgctggggaccctgagtacgagcgcagcaagcagcgcagcaacatcctc
ttcggcgtcatcgccggcatcgtggccgtcaccctggtcatcgtgctggtggtgctggtg
cgctactgccggcagagggaggccaagagcggctaccaggcgggcaagaaggagaccaag
gacctgtacgcccccaagcagggcaacaagagcagcaagagcaagagcaaagtgaagaag
agcaagtcccctaagccgcccaaaccagccgatgacgaggaggagactgggctgcagaag
tccctcaagttcaacctcatgaatgactccgtcagtgacagccctcgcatccacttgcct
ctcaactacccgcctgggagcccggacctggggcgccactaccgctccaactcccctctg
ccctccatccagctgcagccccagtctccctctgcctctaagaagcaccaggtggtgcag
gacctgcctgccactaacacctttgtgggcactggggacaacaactcgacgggctctgag
cagtactctgactacagctaccgcaccaacccccagaaatacaccaacaagcagctacct
catcgtcgagtgacattctctgcagctaatcaggcacaggacttgcaggacccctcacaa
catagttactacgacagcgggctagaagagtcagagacgcccagcagcaagtcatcatca
gggcctcggattgggccattagctctgcctgaggatcattatgagcgcaccacacccgac
ggtagtattggggagatagagcaccctgaaaacgatctccggcctctgcctgacgttgcc
atgactgggacctgcacccgagaatgcacggagttcggccactccgacacctgctggatg
cctggccagtcctccccaaaccgcaggcccaagactgccctgaagctctccacttttgtg
ccttaccaagaacgggggagtcaagagcaagttgggaacggcagccccagactttcggaa
gaacgcagcaccaaaatggccaacctccgcctgctccccacatacagtgccttctccaac
agtagccatgagccctgcaaggactcccctatggaggaaattcctctcacccagacctcg
gacttccagccagccaccaccccctcgtctcaaaccactaagagggagatctacctgtga
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integrated database retrieval system
