Chelonoidis abingdonii (Abingdon island giant tortoise): 116832457
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Entry
116832457 CDS
T07367
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116832457 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116832457 (PNLDC1)
Enzymes [BR:
cabi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116832457 (PNLDC1)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116832457 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF6078
Motif
Other DBs
NCBI-GeneID:
116832457
NCBI-ProteinID:
XP_032649080
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MELGAGQFAQSLPRLQALVLGCEFLGLDMEFTGLHSVFPQGKQPSLFDSPAEWYLKARQS
VQKFTVNQLGLSIFSHEESNKYVAHSYNFFLFPTTFGVMDSEFSFQASSIQFLTHYGFDY
NKFLKDGIPYTNEVQEKKLQQGLLTGNWKVRSTLDKDKVKKVIDDVTRWVPSAEEGGSMV
LHDISGFQIFEVQLILRQALPDVWTEPFGDQKVMVKKVSPWHRWCLENSSCDCCRKELVL
LSARGFTNLFQTLVEAKKPMVGHNMLMDLLHLHDKFYKPLPESYEEFKRNIHSLFPVLID
TKNVTKSIWKEFQFPRASNLLEVYEILCSDLNPTNPTCPVIAHASDCLKYADKKSPHEAA
YDAFLCGSVLLKVAHLLLSRMPCDTLETGPSFSQYLSALTKYLNQVNLVRAGISTINFSG
TDVPSQRPPLLIASVRGWDGVDEEQIYQKLKALCKFDVRRLTENQFLLLSNKFKDFRVVL
RDYKDHPNLRISLFRYWRHSPQANCLLQICGIVASWSLLAFVIGGSPWYAM
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggagctgggggctgggcagttcgcgcagagcctgccccgcttgcaggcgctggtcctg
ggctgcgagttcctggggcttgatatggaattcacaggtttacattcagtctttccacaa
ggcaaacagcccagtctcttcgattcacctgctgagtggtatctgaaggccagacagagt
gttcagaagttcacagtcaatcagctcgggttgtctatattttcacatgaagaatcaaac
aagtatgttgcacactcctataacttcttcctcttccccacaacgtttggagtcatggac
tctgaattctctttccaggcatctagcattcagttcctgacgcattacggttttgattat
aataagtttctgaaagatggaatcccatatacgaatgaggtacaggagaagaaacttcag
caaggtctcttaactggaaactggaaagttcgcagcactttggacaaggataaagtgaaa
aaggtgattgatgatgtgacacgctgggtgccatcagcagaagagggaggctctatggtt
ttacatgatattagtggttttcagatatttgaggtacagctgattctgagacaggcactt
ccagatgtttggacagagccttttggagaccagaaggtgatggtgaaaaaggtgagtcca
tggcatcgctggtgtctggagaactcttcttgtgactgctgccgaaaggagcttgttctt
ctctctgcccggggtttcaccaacctcttccagaccctcgttgaagccaagaagccaatg
gtgggacacaacatgctcatggaccttctgcatcttcatgacaagttttacaagcccctc
ccagaaagctatgaggagtttaaaaggaatattcacagcctgtttcctgtcctcatagac
accaagaatgtaacaaaatcaatttggaaggaatttcagtttcctcgagcatctaacctc
ctagaagtttatgaaatcctgtgcagtgacctcaatcccaccaaccccacatgtccagtg
attgcccatgcaagtgactgtttaaaatatgctgacaagaaatccccccatgaggcggcc
tatgatgcatttctctgtggatcagttcttttgaaagtagctcacttgctcctcagcaga
atgccatgtgacacgctggagactggtccctctttctctcagtatctcagtgcattaacc
aagtacctgaaccaggtgaatctggtccgagctggcatttcaacaatcaatttctctggc
acagatgtccctagccagcgtccacctcttctgattgccagtgttcggggatgggatggg
gtggatgaagaacagatctatcaaaagttaaaagctctgtgcaagtttgatgtcagacga
ctgaccgagaaccaatttctgttgctctccaataaatttaaggatttcagggttgttctg
cgagattataaagatcaccctaatctgcggatttcactctttcgctactggagacactca
ccacaagcgaactgcttgctacaaatttgtggaattgtggcatcatggtctcttctggcc
tttgtgattggaggatctccctggtatgccatgtaa
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